View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4759-Insertion-2 (Length: 915)

Name: NF4759-Insertion-2
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4759-Insertion-2
NF4759-Insertion-2
[»] chr4 (9 HSPs)
chr4 (8-437)||(37780402-37780810)
chr4 (654-822)||(37779729-37779892)
chr4 (516-601)||(37780249-37780324)
chr4 (40-106)||(37807470-37807536)
chr4 (169-231)||(37807342-37807404)
chr4 (841-873)||(37779683-37779715)
chr4 (599-643)||(37779913-37779957)
chr4 (172-249)||(37788905-37788982)
chr4 (174-231)||(37797152-37797209)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 37780810 - 37780402
Alignment:
Q  8 ataaacgttgctgaaataaaagtcagtcccatgccataaaggtttagaagtaaacttcccctggaacatacattgaccatattagtatctttaattaatg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  37780810 ataaacgttgctgaaataaaagtcagtcccatgccataaaggtttagaagtaaacttcccctggaacatacattgaccatattagtatctttaat----g 37780715  T
Q  108 tcatataaaggctctttatatgaccgaaaatactatatggaagaaaaaggtgaacaattcagtagcatacccaaacaatccacaaagaaatgtcatataa 207  Q
    |||||||||| ||||||| |||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37780714 tcatataaagactctttaaatg-----------------gaagaaaaaggtgaacaattcagtagcatacccaaacaatccacaaagaaatgtcatataa 37780632  T
Q  208 agaaccttccaagtaatctttggtttcttcttccttcataacnnnnnnnngccagaaccattttggtctagtagttaatctaatgcacacatctcatgtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||        | ||||||||||||||| |||||||||||||||||||| |||||||||||    
T  37780631 agaaccttccaagtaatctttggtttcttcttccttcataacaaaaaaaaggcagaaccattttggtttagtagttaatctaatgcacgcatctcatgtt 37780532  T
Q  308 aatttgtctctactcatacacttgaggtcggaagtatatttttaaacatcattcnnnnnnnnnnnnnnacgggttttaaacattattcttgaaatgctat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||| ||||||||||||||||||||||||    
T  37780531 aatttgtctctactcatacacttgaggtcggaagtatatttttaaacatcattcttttttctttttttacgggttataaacattattcttgaaatgctat 37780432  T
Q  408 tttcaaataagtataaagcaaacaagtgtt 437  Q
    ||| ||||||||||||||||||||||||||    
T  37780431 tttgaaataagtataaagcaaacaagtgtt 37780402  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 654 - 822
Target Start/End: Complemental strand, 37779892 - 37779729
Alignment:
Q  654 ctgtaggaactaatgagggaataattaataatgttattaaatttcaccaaatgggtgatagctatcttaatt-ttttattgactggctatattgccgaac 752  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37779892 ctgtacgaactaatgaaggaataattaataatgttattaaatttcaccaaatgggtgatagctatcttaatttttttattgactggctatattgccgaac 37779793  T
Q  753 nnnnnnnnnnnnnnnnnctttctacctggatagtttcaagatagtgatcttaggagaaatattatttttt 822  Q
                     ||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  37779792 -----ttttttttttttctttctacctggatagtttcaagatagtgatctta-gagaaaaattatttttt 37779729  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 516 - 601
Target Start/End: Complemental strand, 37780324 - 37780249
Alignment:
Q  516 gcacatatttttaagcaaaagttactacttttcattactcaaacaatgacctaagaatattacaatgcatgattgtttaacatgta 601  Q
    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  37780324 gcacatatttttaagcaaaagttactacttttcattact----------cctaagaatattacaatgcatgattgtttaacatgta 37780249  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 37807536 - 37807470
Alignment:
Q  40 gccataaaggtttagaagtaaacttcccctggaaca-tacattgaccatattagtatctttaattaat 106  Q
    ||||||||||||||||| ||||||||||||| |||| |||| | ||||||||||||||||||||||||    
T  37807536 gccataaaggtttagaaataaacttcccctgcaacattaca-taaccatattagtatctttaattaat 37807470  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 37807404 - 37807342
Alignment:
Q  169 gtagcatacccaaacaatccacaaagaaatgtcatataaagaaccttccaagtaatctttggt 231  Q
    ||||| ||||||||||||||||| |||||||  | | ||||||||||||||||||||||||||    
T  37807404 gtagcgtacccaaacaatccacatagaaatgaaagaaaaagaaccttccaagtaatctttggt 37807342  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 841 - 873
Target Start/End: Complemental strand, 37779715 - 37779683
Alignment:
Q  841 ccattgaaactaatgagagagtaatcaataatg 873  Q
    |||||||||||||||||||||||||||||||||    
T  37779715 ccattgaaactaatgagagagtaatcaataatg 37779683  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 599 - 643
Target Start/End: Complemental strand, 37779957 - 37779913
Alignment:
Q  599 gtaagtttcaagtgatgttttagggaagaactggatctttttctt 643  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||||    
T  37779957 gtaagtttcaagtaatgttttcgggaagaaccggatctttttctt 37779913  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 37788982 - 37788905
Alignment:
Q  172 gcatacccaaacaatccacaaagaaatgtcatataaagaaccttccaagtaatctttggtttcttcttccttcataac 249  Q
    ||||||||||||||||| || ||||||| || | |||| || |||| ||||||||||||| | | |||||| ||||||    
T  37788982 gcatacccaaacaatccgcatagaaatgccagagaaagcacattccgagtaatctttggtctttccttcctgcataac 37788905  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 37797209 - 37797152
Alignment:
Q  174 atacccaaacaatccacaaagaaatgtcatataaagaaccttccaagtaatctttggt 231  Q
    |||||||||||| ||| | || |||| |||| |||| |||||||||||||||||||||    
T  37797209 atacccaaacaacccagataggaatgccataaaaagcaccttccaagtaatctttggt 37797152  T

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