View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4759-Insertion-3 (Length: 893)
Name: NF4759-Insertion-3
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759-Insertion-3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 8 - 866
Target Start/End: Original strand, 45991266 - 45992099
Alignment:
| Q |
8 |
ctatcactgatatcttttgattggaaaatggagttattctaatctcgttctcctcctcctagcggtggttgccttgttttaggatcagggttgttttgtc |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45991266 |
ctatcactgatatcttttgattggaaaatggagttgttctaatctcgttctcctccttctagcggtggttgccttgttttaggataagggttgttttgtc |
45991365 |
T |
|
| Q |
108 |
cttgaagctgcgttctgggtttgtgtgttgtgattggattcgctctaatttgcgaattttctcaacgtttctgcgattgatgctgggttctgttttaaaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45991366 |
cttgaagctgcgttctgggtttgtgtgttgtgattggattcgctcagatttgcgaattttctcaacgtttctgcgattgatgctgggttctgttttaaaa |
45991465 |
T |
|
| Q |
208 |
ccactggttgtcctttgtttctttggtttggtctgcttattcaaaggtttgattatagttgtgttgggtttttgatttatggtttttgagagaaatttgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
45991466 |
ccactggttgtcctttgtttctttggtttg----------------gtttgattatagttgtgttgggtt--------------tttgagagaaatttgg |
45991535 |
T |
|
| Q |
308 |
ggaagaaaagagagttaactagtgttgctacacccatcaaaaatttgctaaagtagctcttacggggatgtaagagagcgacaaccttattgttgttgtt |
407 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45991536 |
gaaagaaaagagagttaactagtgttgctacacccatcaaaaatttgctaaagtagcacttacggggatgtaagagagcgacaaccttattgttgttgtt |
45991635 |
T |
|
| Q |
408 |
gttgagagtaacaacaacaaatttctgattaagttttcatccatcaaccttcttttatcattccataatcaacaacactagagatttcagcttcatcaac |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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|
| T |
45991636 |
gttgagagtaacaacaacaaatttctgattaaattttcatccatcaaccttcttttatcattccataatcaacaacaacagagatttcaacttcatcaac |
45991735 |
T |
|
| Q |
508 |
accaacaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggcatgagtttgaatgtttatgtttgatgataatttcttggagag |
607 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45991736 |
accaacaatcacaacaacaaaaaatatctaattaaattttcttcttggattcaaaggcatgagtttgaatgtttatgtttgatgataatttcttggagaa |
45991835 |
T |
|
| Q |
608 |
aatatacggcggagaagacaaagtggctgaagaattggtggttgatgattaggcttgatcaagtagtagaatagtttatggaatggatctgtgagaaatt |
707 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45991836 |
aatatacggcggagaagacgaagtggctgaagaattggtggttgaggattaggcttgatcaagtagtagaatagtttatggaatggatctgtgagaaatt |
45991935 |
T |
|
| Q |
708 |
tctttttatgtggatgttgcaaaatgggtttagaatcaatacatata---agataagat----ttgggatcccgcctcccgggctttgatgaacaggtta |
800 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||||| ||||||||| | ||||||| || |||||| | || | |||||||||||||||||||| |
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|
| T |
45991936 |
tctttttatgtggatgtcgtaaaat-ggtttagaattgatacatatatatatataagataggatttggatccag-cttctgggctttgatgaacaggtta |
45992033 |
T |
|
| Q |
801 |
agcaatggatgatgaaggagaaagaacatatgaatttgcttttatttagttttgatgtttttctgt |
866 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45992034 |
agcaatggatgatgaaggagaaagaacatatgaatttgcttttatttagttttgatgtttttctgt |
45992099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 8 - 866
Target Start/End: Original strand, 46151149 - 46152012
Alignment:
| Q |
8 |
ctatcactgatatcttttgattggaaaatggagttattctaatctcgttctcctcctcctagcggtggttgccttgttttaggatcagggttgttttgtc |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
46151149 |
ctatcactgttatcttttgattggaaaatggagttgttctggtctcgttctcctccttctagcggtggttgccttgttttaggatcaggggtgttttgtc |
46151248 |
T |
|
| Q |
108 |
cttgaagctgcgttctgggtttg-----tgtgttgtgattggattcgctctaatttgcgaattttctcaacgtttctgcgattgatgctgggttctgttt |
202 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
46151249 |
cttgaagctgcgttctgggtttgaatcttgttttgtgattggattcgctcagatttgcgaattttctcaacgtttatgcgattgatgctgggttctgttt |
46151348 |
T |
|
| Q |
203 |
taaaaccactggttgtcctttgtttctttggtttggtctgcttattcaaaggtttgattatagttgtgttgggtttttgatttatggtttttgagagaaa |
302 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
46151349 |
taaaaccaccggctgtcctttgtttctttggtttggtttgcttattcaaaggtttgattatagttgtgttgggttt--gatttatggtttttgagagaaa |
46151446 |
T |
|
| Q |
303 |
tttggggaagaaaagagagttaactagtgttgctacacccatcaaaaattt--gctaaagtagctcttacggggatgtaagagagcgacaaccttattgt |
400 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| || ||| |||||||| || |||| |||||||||||||||||||||| ||||||| |
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|
| T |
46151447 |
tctggggaagaaaagagagttaactagtgttgctacacccaataattttttttgctaaagttgcacttatggggatgtaagagagcgacaactttattgt |
46151546 |
T |
|
| Q |
401 |
tgttgttgttgagagtaacaacaacaaatttctgattaagttttcatccatcaaccttcttttatcattccataatcaacaacactagagatttcagctt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
46151547 |
tgttgttgttgagagtaacaacaacaaatttctgattaaattttcatccatcaaccttcttttatcattctataatcaacaacaacagagatttcagctt |
46151646 |
T |
|
| Q |
501 |
catcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggc--atgagtttgaatgtttatgtttgatgataattt |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
46151647 |
catcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggcatatgagtttgaatgtttatgtgtgatgataattt |
46151746 |
T |
|
| Q |
599 |
cttggagagaatatacggcggagaagacaaagtggctgaagaattggtggttgatgattaggcttgatcaagtagtagaatagtttatggaatggatctg |
698 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46151747 |
cttggagagaatatacggtggagaagacgaagtggctgaagaattggtggttgaggattaggcttgatcaagtagtagaatagtttatggaatggatttg |
46151846 |
T |
|
| Q |
699 |
tgagaaatttctttttatgtggatgttgcaaaatgggtttagaatcaatacatataagataagatttgggatcccgcctcccgggctttgatgaacaggt |
798 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| | |||||||||| |||||||||||||| ||||| |||||| | || | ||| |||||||||||||| |
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|
| T |
46151847 |
tgagaaatttctttttatgtggatgtcgtaaagt-ggtttagaattgatacatataagataggattt-ggatccag-cttctgggatttgatgaacaggt |
46151943 |
T |
|
| Q |
799 |
taagc-aatggatgatgaaggagaaagaacatatgaatttgcttttatttagttttgatgtttttctgt |
866 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46151944 |
taagcaaatggatgatgaaggagaaagaacatatgaatttgcttttatttagttttgatgtttttctgt |
46152012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 388 - 752
Target Start/End: Original strand, 3871623 - 3871989
Alignment:
| Q |
388 |
acaaccttattgttgttgttgttgagagtaacaacaacaaatttctgattaagttttcatccatcaaccttcttttatcattccataatcaacaacacta |
487 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||||| |||||||||| | |
|
|
| T |
3871623 |
acaaccttagtattgttgttgttgagagtaacaacaacaaatttctaattaaattttcatccattagccttcttttatcattccatgatcaacaacaaca |
3871722 |
T |
|
| Q |
488 |
gagatttcagcttcatcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttcttggattcaaaggcatgagtttgaatgtttatgttt |
587 |
Q |
| |
|
|| || || ||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||| |||||| |||||||||||||| |||| | |
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|
| T |
3871723 |
aaggttgcaacttcatcaaattc--taatcacaacaacaacaaat-cctaattaaaatttcttcttggattgaaaggcttgagtttgaatgttcatgtgt |
3871819 |
T |
|
| Q |
588 |
gatgataatttcttggagagaatata----------cggcggagaagacaaagtggctgaagaattggtggttgatgattaggcttgatcaagtagtaga |
677 |
Q |
| |
|
||||||||||| | |||| ||||| | ||||||||||||||||||| ||||| | ||||||||| |||||| || ||||||| |
|
|
| T |
3871820 |
gatgataatttatgggagggaatacatgacagacattggcggagaagacaaagtggttgaagcacaggtggttgaggattag----gaaaccttagtaga |
3871915 |
T |
|
| Q |
678 |
atagtttatggaatggatctgtgagaaatttctttttatgtggatgttgcaaaatgggtttagaatcaatacata |
752 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||| | ||||||||||| |||| ||||||| |
|
|
| T |
3871916 |
atagtttatggaatggatttgtgagaaattt-attttatgtggatgtcgtaaaatgggtttggaattgatacata |
3871989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 499 - 553
Target Start/End: Original strand, 19802334 - 19802388
Alignment:
| Q |
499 |
ttcatcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttctt |
553 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
19802334 |
ttcatcaccaccaacaatctcaacaacaacaaatttctaatttaattttcttctt |
19802388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 547
Target Start/End: Complemental strand, 37464571 - 37464522
Alignment:
| Q |
498 |
cttcatcaacaccaacaatcacaacaacaacaaatatctaattaaatttt |
547 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
37464571 |
cttcatcaccaccaacaatatcaacaacaacaaatttctaattaaatttt |
37464522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 553
Target Start/End: Complemental strand, 5225094 - 5225030
Alignment:
| Q |
489 |
agatttcagcttcatcaacaccaacaatcacaacaacaacaaatatctaattaaattttcttctt |
553 |
Q |
| |
|
|||||| | |||||||||||||||||||| |||| || ||||| |||||||||||||||||||| |
|
|
| T |
5225094 |
agatttaaacttcatcaacaccaacaatctaaacagcatcaaatttctaattaaattttcttctt |
5225030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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