View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759-Insertion-5 (Length: 758)
Name: NF4759-Insertion-5
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759-Insertion-5 |
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| [»] scaffold1444 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 42177054 - 42177512
Alignment:
| Q |
8 |
atttcatttgtactatcttctttttt-cttttgtataatttctaccatcattaatacaatatactcctaaaatttgattttggtttctatctatggatgt |
106 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42177054 |
atttcatttgtactatcttctttttttcttttgtataatttctaccatcattaatacaatatactcctaaaattttattttggtttctatctatggatgt |
42177153 |
T |
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| Q |
107 |
catgtttataaacgtataaattgtgaattcgatacttaaaaatcacaccaataaaactcagtggtatggagcaaaaggaaagagtaatcaaaattagagt |
206 |
Q |
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| T |
42177154 |
catgtttataaacgtatacattgtgaattcgatacttaaaaatcacaccaataaaactc---ggtatggagcaaaaggaaagagtaatcaaaattaaagt |
42177250 |
T |
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| Q |
207 |
aacttcaagaaaaa-caacatcaataaataaatctagctttaagtgtgaagcaaccacaaatattta-tttacctagttcggataaatttatcttacatc |
304 |
Q |
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| T |
42177251 |
aactttaagaaaaaacaacatcaataaacaaatctagatttaagtgtgaagaaaccacaaatattttgtttacctagttcggataaatttatcttacatc |
42177350 |
T |
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| Q |
305 |
taaaggagggagtagctctcttatccactatgaaatgagtgatgcaaaaagattacaaaaaatttgatcccaaactacaaaggacaaaccctaatttcta |
404 |
Q |
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| T |
42177351 |
taaaggagggagtagctctcctatccactatgaaatgagtgatgcaaaaagattacaaaaaatttgatcccaaactacaaagaacaaaccctaatttcta |
42177450 |
T |
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| Q |
405 |
atcattttttaagtcagtcaaaagtcaaaccaacgatgaattccaagagagaaaaaaataaa |
466 |
Q |
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| T |
42177451 |
atcgtttttctaatcagtcaaaagtcagacctacaatgaattccaagagaaaaaaaaataaa |
42177512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 511 - 691
Target Start/End: Original strand, 42177554 - 42177752
Alignment:
| Q |
511 |
ctctaatgatatgtcactacccgatgcgtttgtgaaatgtttc-ctaaccaagacctccaaattgc-------------gccaannnnnnn--atgaact |
594 |
Q |
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| T |
42177554 |
ctctaatgatatgtcactacccaatgcgtttgtgaaatgtttttctaaccaagacctccaaattgctgaaccaaattgcgccaaaatttttttatgaact |
42177653 |
T |
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| Q |
595 |
tcaatatcaattt-aatttgagccaatttt-caaccgtttcatcaatggtttctacctcgaactacgattatgcttcaagaaaattcaactcttgatta |
691 |
Q |
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| T |
42177654 |
tcaatatcaattttaatttgagccaatttttcaaccgtttcatcaatggtttcttcctcgaactacaattatgcttcaagaaaattcaactcttgatta |
42177752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 368
Target Start/End: Original strand, 6628839 - 6628880
Alignment:
| Q |
327 |
atccactatgaaatgagtgatgcaaaaagattacaaaaaatt |
368 |
Q |
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| T |
6628839 |
atccactatgaaattagtgatgcaaagagattacaagaaatt |
6628880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 34842604 - 34842698
Alignment:
| Q |
268 |
atttatttacctagttcggataaatttatcttacatctaaaggagggagtagctctcttatccactatgaaatgagtgatgcaaaaagattacaa |
362 |
Q |
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| T |
34842604 |
atttgtttacccagtttggataaatttatcctacatttgagggagagagcagctctctaatccactatgtaatgagtgatacaaagaggttacaa |
34842698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 402
Target Start/End: Complemental strand, 41163333 - 41163196
Alignment:
| Q |
265 |
aatatttatttacctagttcggataaatttatcttacatctaaaggagggagtagctctcttatccactatgaaatgagtgatgcaaaaagattacaaaa |
364 |
Q |
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||||||| |||||||||||||| ||| | | |||||||| ||||||| |||||||| |||||| |||||||||||||| |||| || || ||||| |
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| T |
41163333 |
aatatttgtttacctagttcggcctaatatgacctacatctaggggaggga--agctctctaatccaccatgaaatgagtgatacaaagaggttccaaaa |
41163236 |
T |
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| Q |
365 |
aatttgatcccaaa-ct-acaaaggacaaaccctaatttc |
402 |
Q |
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| T |
41163235 |
aattagatccaaaagctcataaagaacaaaccctaatttc |
41163196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1444 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1444
Description:
Target: scaffold1444; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 1297 - 1334
Alignment:
| Q |
388 |
acaaaccctaatttctaatcattttttaagtcagtcaa |
425 |
Q |
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| T |
1297 |
acaaaccctaatttctactcattttttaagtcattcaa |
1334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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