View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4759-Insertion-7 (Length: 621)

Name: NF4759-Insertion-7
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4759-Insertion-7
NF4759-Insertion-7
[»] chr7 (10 HSPs)
chr7 (8-619)||(39169427-39170037)
chr7 (548-585)||(47941310-47941347)
chr7 (548-599)||(27517312-27517364)
chr7 (560-600)||(33645991-33646031)
chr7 (546-600)||(46056040-46056095)
chr7 (546-584)||(39907788-39907826)
chr7 (548-600)||(3968787-3968840)
chr7 (546-591)||(48507707-48507752)
chr7 (554-586)||(21453287-21453319)
chr7 (544-584)||(46104349-46104389)
[»] chr4 (8 HSPs)
chr4 (535-600)||(7694040-7694106)
chr4 (544-603)||(42866051-42866111)
chr4 (538-600)||(43372001-43372062)
chr4 (538-600)||(18628573-18628636)
chr4 (467-501)||(47771902-47771936)
chr4 (544-584)||(16200028-16200068)
chr4 (546-597)||(28300332-28300384)
chr4 (546-597)||(50742869-50742921)
[»] chr8 (7 HSPs)
chr8 (537-597)||(42215339-42215400)
chr8 (546-581)||(7646191-7646226)
chr8 (467-525)||(4389850-4389908)
chr8 (546-588)||(38537576-38537618)
chr8 (537-596)||(6509337-6509397)
chr8 (549-600)||(8062317-8062369)
chr8 (548-584)||(32841355-32841391)
[»] chr6 (10 HSPs)
chr6 (544-600)||(33887813-33887870)
chr6 (547-600)||(7945914-7945967)
chr6 (548-582)||(769126-769160)
chr6 (543-580)||(7446530-7446567)
chr6 (560-600)||(19275666-19275707)
chr6 (544-599)||(1401092-1401148)
chr6 (548-580)||(2735056-2735088)
chr6 (535-583)||(4246384-4246432)
chr6 (548-588)||(10860958-10860998)
chr6 (541-600)||(28088252-28088312)
[»] chr3 (6 HSPs)
chr3 (545-597)||(24785189-24785242)
chr3 (546-584)||(25447291-25447329)
chr3 (537-596)||(1816559-1816619)
chr3 (548-584)||(22203417-22203453)
chr3 (537-585)||(38462257-38462305)
chr3 (549-596)||(41724199-41724247)
[»] chr2 (11 HSPs)
chr2 (544-600)||(42419980-42420037)
chr2 (537-600)||(35486393-35486457)
chr2 (539-583)||(33931618-33931662)
chr2 (537-588)||(13866865-13866916)
chr2 (562-603)||(42817403-42817445)
chr2 (548-585)||(39621938-39621975)
chr2 (537-581)||(9551555-9551599)
chr2 (558-597)||(10884554-10884594)
chr2 (544-584)||(33319859-33319899)
chr2 (561-600)||(36852472-36852512)
chr2 (468-516)||(43965244-43965292)
[»] chr5 (14 HSPs)
chr5 (554-600)||(8651383-8651429)
chr5 (537-587)||(9106797-9106847)
chr5 (535-600)||(17368650-17368716)
chr5 (467-516)||(26516205-26516254)
chr5 (466-513)||(31687931-31687978)
chr5 (554-600)||(32408622-32408669)
chr5 (554-596)||(9174809-9174851)
chr5 (466-516)||(20982249-20982299)
chr5 (544-600)||(4619690-4619747)
chr5 (556-600)||(30217077-30217122)
chr5 (467-519)||(42582818-42582871)
chr5 (537-600)||(16889711-16889775)
chr5 (537-581)||(18857450-18857494)
chr5 (468-516)||(40534102-40534150)
[»] chr1 (6 HSPs)
chr1 (544-600)||(35017559-35017616)
chr1 (548-584)||(7137045-7137081)
chr1 (546-597)||(7472296-7472348)
chr1 (546-600)||(6279384-6279439)
chr1 (467-516)||(47885122-47885171)
chr1 (538-586)||(33527192-33527240)


Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 619
Target Start/End: Complemental strand, 39170037 - 39169427
Alignment:
Q  8 attccggccaaggctccgaactcgattactctaaactctccggcattattatcccaggcttcgcttctactcagcttcgagcatggtctattcttgactg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39170037 attccggccaaggctccgaactcgattactctaaactctccggcattattatcccaggcttcgcttctactcagcttcgagcatggtctattcttgactg 39169938  T
Q  108 cccttactctccgctagatttcaatccgctcgatttggtttggctcgacaccaccaaagtacaaacaatctcactctctatatctctctccgatatttca 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169937 cccttactctccgctagatttcaatcctctcgatttggtttggctcgacaccaccaaagtacaaacaatctcactctctatatctctctccgatatttca 39169838  T
Q  208 acgtcgttttgcattttctgtatgatgattgaatcttaccgcggcaggcgataaannnnnnnnctttagatgatcagttttgtgaaatgtttttgttagc 307  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  39169837 acgtcgttttgcatttactgtatgatgattgaatcttaccgtggcaggcgataatttttttttctttagatgatcagttttgtgaaatgtttttgttagc 39169738  T
Q  308 ttatcgtgaaagtttttatctcaattctgttacaattgtctgtatgtagatagatgagtgcgtaggttctgaataaattcttatnnnnnnntatcaactt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  39169737 ttatcgtgaaagtttttatctcaattctgttacaattgtctgtatgtagatagatgagtgcgtaggttctgaataaattcttataaaaaaatatcaactt 39169638  T
Q  408 attcaaagaatttgtgcatgtttattttctctgtttggaacttagttctggaatcagctgcttatagcataagcgcttatcatatgagcgcttacgaata 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169637 attcaaagaatttgtgcatgtttattttctctgtttggaacttagttctgaaatcagctgcttatagcataagcgcttatcatatgagcgcttacgaata 39169538  T
Q  508 agctatttccattacacaagnnnnnnntgaagtcagactgtttttgtataatctataaactgttttcataagctatcctgagagcttatggaagtaggtt 607  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169537 agctatttccattacacaag-aaaaaatgaagtcagactgtttttgtataatctataaactgttttcataagctatcctgagagcttatggaagtaggtt 39169439  T
Q  608 ttttcataagtt 619  Q
    ||||||||||||    
T  39169438 ttttcataagtt 39169427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 548 - 585
Target Start/End: Original strand, 47941310 - 47941347
Alignment:
Q  548 tttttgtataatctataaactgttttcataagctatcc 585  Q
    |||| |||||||||||||||||||||||||||||||||    
T  47941310 ttttagtataatctataaactgttttcataagctatcc 47941347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 599
Target Start/End: Complemental strand, 27517364 - 27517312
Alignment:
Q  548 tttttgtataatctataaactgttttcataagctatcct-gagagcttatgga 599  Q
    ||||||||||| ||| |||||||||||||||| |||||| |||||||||||||    
T  27517364 tttttgtataagctacaaactgttttcataagttatcctggagagcttatgga 27517312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 600
Target Start/End: Complemental strand, 33646031 - 33645991
Alignment:
Q  560 ctataaactgttttcataagctatcctgagagcttatggaa 600  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  33646031 ctataaactgttttcataagctatctggagagcttatggaa 33645991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 600
Target Start/End: Complemental strand, 46056095 - 46056040
Alignment:
Q  546 tgtttttgtataatctataaactgttttcataagctatcctg-agagcttatggaa 600  Q
    ||||||||| ||| ||||||| |||||||||||||||||| | |||||||||||||    
T  46056095 tgtttttgtgtaagctataaattgttttcataagctatcccgtagagcttatggaa 46056040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 584
Target Start/End: Original strand, 39907788 - 39907826
Alignment:
Q  546 tgtttttgtataatctataaactgttttcataagctatc 584  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  39907788 tgtttttgtataagctataaactgttttcataaactatc 39907826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 600
Target Start/End: Complemental strand, 3968840 - 3968787
Alignment:
Q  548 tttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||    
T  3968840 tttttgtataatatataagctattttcataagctatcctggagagtttatggaa 3968787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 591
Target Start/End: Original strand, 48507707 - 48507752
Alignment:
Q  546 tgtttttgtataatctataaactgttttcataagctatcctgagag 591  Q
    ||||||||||||  ||||||||||||||||||||| ||||| ||||    
T  48507707 tgtttttgtatatgctataaactgttttcataagccatccttagag 48507752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 586
Target Start/End: Original strand, 21453287 - 21453319
Alignment:
Q  554 tataatctataaactgttttcataagctatcct 586  Q
    ||||| |||||||||||||||||||||||||||    
T  21453287 tataagctataaactgttttcataagctatcct 21453319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 46104389 - 46104349
Alignment:
Q  544 actgtttttgtataatctataaactgttttcataagctatc 584  Q
    |||||||| |||||| |||||||||||||||||||| ||||    
T  46104389 actgttttcgtataagctataaactgttttcataagttatc 46104349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 535 - 600
Target Start/End: Complemental strand, 7694106 - 7694040
Alignment:
Q  535 tgaagtcagactgtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||| |||||| ||||| ||||||||    
T  7694106 tgaagtcaaactgtttttgtataagctataagctgttttcataagttatcctggagagtttatggaa 7694040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 544 - 603
Target Start/End: Original strand, 42866051 - 42866111
Alignment:
Q  544 actgtttttgtataatctataaactgttttcataagctatcc-tgagagcttatggaagta 603  Q
    ||||||||| ||||| ||||||  |||||||||||||||||| ||||||||||||||||||    
T  42866051 actgtttttatataagctataagttgttttcataagctatccttgagagcttatggaagta 42866111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 600
Target Start/End: Complemental strand, 43372062 - 43372001
Alignment:
Q  538 agtcagactgtttttgtataatctataaactgttttcataagctatcctgagagcttatggaa 600  Q
    ||||| ||||||||| ||||| |||||||||| |||||||||||||||  |||||||||||||    
T  43372062 agtcaaactgtttttatataagctataaactgatttcataagctatcc-aagagcttatggaa 43372001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 600
Target Start/End: Complemental strand, 18628636 - 18628573
Alignment:
Q  538 agtcagactgtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    ||||| ||||||||| |||||  ||||||||||||||||||| |||| | ||||||||||||||    
T  18628636 agtcaaactgtttttatataagttataaactgttttcataagttatcttggagagcttatggaa 18628573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 501
Target Start/End: Original strand, 47771902 - 47771936
Alignment:
Q  467 gcttatagcataagcgcttatcatatgagcgctta 501  Q
    |||||||||||||||||||||||||| ||||||||    
T  47771902 gcttatagcataagcgcttatcatataagcgctta 47771936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 16200068 - 16200028
Alignment:
Q  544 actgtttttgtataatctataaactgttttcataagctatc 584  Q
    ||||||||||||||  |||||| ||||||||||||||||||    
T  16200068 actgtttttgtatatgctataagctgttttcataagctatc 16200028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 597
Target Start/End: Complemental strand, 28300384 - 28300332
Alignment:
Q  546 tgtttttgtataatctataaactgttttcataagctatcctg-agagcttatg 597  Q
    ||||||||||||| ||||||||| |||||||| |||||| || ||||||||||    
T  28300384 tgtttttgtataagctataaactattttcataggctatcttgaagagcttatg 28300332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 546 - 597
Target Start/End: Complemental strand, 50742921 - 50742869
Alignment:
Q  546 tgtttttgtataatctataaactgttttcataagctatcct-gagagcttatg 597  Q
    ||||||||||||||  ||||  ||||||||||||||||||| |||||||||||    
T  50742921 tgtttttgtataataaataacttgttttcataagctatcctggagagcttatg 50742869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 42215400 - 42215339
Alignment:
Q  537 aagtcagactgtttttgtataatctataaactgttttcataagctatcct-gagagcttatg 597  Q
    |||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||||    
T  42215400 aagtcaaactgtttttgtataatctataacctattttcatatgctatcctggagagcttatg 42215339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 581
Target Start/End: Original strand, 7646191 - 7646226
Alignment:
Q  546 tgtttttgtataatctataaactgttttcataagct 581  Q
    ||||||||||||||||||||||||| ||||||||||    
T  7646191 tgtttttgtataatctataaactgtcttcataagct 7646226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 4389850 - 4389908
Alignment:
Q  467 gcttatagcataagcgcttatcatatgagcgcttacgaataagctatttccattacaca 525  Q
    |||||||||| ||| ||||||||||||||| | || |||||||||||||| || |||||    
T  4389850 gcttatagcagaagtgcttatcatatgagcacatatgaataagctatttctataacaca 4389908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 588
Target Start/End: Original strand, 38537576 - 38537618
Alignment:
Q  546 tgtttttgtataatctataaactgttttcataagctatcctga 588  Q
    |||||||||||||||||||| ||| |||||||| |||||||||    
T  38537576 tgtttttgtataatctataagctgctttcataaactatcctga 38537618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 596
Target Start/End: Complemental strand, 6509397 - 6509337
Alignment:
Q  537 aagtcagactgtttttgtataatctataaactgttttcataagctatcct-gagagcttat 596  Q
    |||||| | ||| ||| ||||| |||||| |||||||||||||||||||| ||||||||||    
T  6509397 aagtcaaattgtatttatataagctataagctgttttcataagctatcctggagagcttat 6509337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 600
Target Start/End: Original strand, 8062317 - 8062369
Alignment:
Q  549 ttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||||||| |||||| |||||||||||||||||| | ||||| ||||||||    
T  8062317 ttttgtataagctataagctgttttcataagctatcttagagagattatggaa 8062369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 584
Target Start/End: Complemental strand, 32841391 - 32841355
Alignment:
Q  548 tttttgtataatctataaactgttttcataagctatc 584  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  32841391 tttttgtataagctataagctgttttcataagctatc 32841355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 600
Target Start/End: Original strand, 33887813 - 33887870
Alignment:
Q  544 actgtttttgtataatctataaactgttttcataagctatcctgaga-gcttatggaa 600  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  33887813 actgttttagtataatcaataaactgttttcataagctatcctgaaatgcttatggaa 33887870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 547 - 600
Target Start/End: Complemental strand, 7945967 - 7945914
Alignment:
Q  547 gtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  7945967 gtttttgtataatctataacctgttttcat-agctatcctggagagcttatggaa 7945914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 582
Target Start/End: Original strand, 769126 - 769160
Alignment:
Q  548 tttttgtataatctataaactgttttcataagcta 582  Q
    ||||||||||| |||||||||||||||||||||||    
T  769126 tttttgtataagctataaactgttttcataagcta 769160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 580
Target Start/End: Complemental strand, 7446567 - 7446530
Alignment:
Q  543 gactgtttttgtataatctataaactgttttcataagc 580  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  7446567 gactgtttttgtataagctataagctgttttcataagc 7446530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 600
Target Start/End: Complemental strand, 19275707 - 19275666
Alignment:
Q  560 ctataaactgttttcataagctatcctg-agagcttatggaa 600  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  19275707 ctataaactgttttcataagctatcatgaagagcttatggaa 19275666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 599
Target Start/End: Original strand, 1401092 - 1401148
Alignment:
Q  544 actgtttttgtataatctataaactgttttcataagctatcct-gagagcttatgga 599  Q
    |||| ||| |||||| |||||| |||||||||||||||||| | |||||||||||||    
T  1401092 actgctttagtataagctataagctgttttcataagctatcatggagagcttatgga 1401148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 580
Target Start/End: Original strand, 2735056 - 2735088
Alignment:
Q  548 tttttgtataatctataaactgttttcataagc 580  Q
    |||||||||||||||||| ||||||||||||||    
T  2735056 tttttgtataatctataagctgttttcataagc 2735088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 4246384 - 4246432
Alignment:
Q  535 tgaagtcagactgtttttgtataatctataaactgttttcataagctat 583  Q
    |||||||||  ||||||  |||||||||||| |||||||||||||||||    
T  4246384 tgaagtcagtatgttttcatataatctataagctgttttcataagctat 4246432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 588
Target Start/End: Original strand, 10860958 - 10860998
Alignment:
Q  548 tttttgtataatctataaactgttttcataagctatcctga 588  Q
    |||| ||||||||||||| || |||||||||||||||||||    
T  10860958 ttttcgtataatctataagctattttcataagctatcctga 10860998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 600
Target Start/End: Complemental strand, 28088312 - 28088252
Alignment:
Q  541 cagactgtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||| ||||||  ||||| ||||||||||||||||||||||||| | ||||||| ||||||    
T  28088312 cagattgttttcatataagctataaactgttttcataagctatcatggagagctcatggaa 28088252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 597
Target Start/End: Original strand, 24785189 - 24785242
Alignment:
Q  545 ctgtttttgtataatctataaactgttttcataagctatcct-gagagcttatg 597  Q
    |||||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  24785189 ctgtttttgtataatctataacgtgttttcataagctatcctcgagagcttatg 24785242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 584
Target Start/End: Complemental strand, 25447329 - 25447291
Alignment:
Q  546 tgtttttgtataatctataaactgttttcataagctatc 584  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  25447329 tgtttttgtataagctataaactgttttcataagctatc 25447291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 596
Target Start/End: Original strand, 1816559 - 1816619
Alignment:
Q  537 aagtcagactgtttttgtataatctataaactgttttcataagctatcct-gagagcttat 596  Q
    |||||| |||||||||||||||  |||||  |||||||||||||||| || ||||||||||    
T  1816559 aagtcaaactgtttttgtataagatataagttgttttcataagctatactggagagcttat 1816619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 584
Target Start/End: Original strand, 22203417 - 22203453
Alignment:
Q  548 tttttgtataatctataaactgttttcataagctatc 584  Q
    ||||||||||||||||||  |||||||||||||||||    
T  22203417 tttttgtataatctataagttgttttcataagctatc 22203453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 585
Target Start/End: Original strand, 38462257 - 38462305
Alignment:
Q  537 aagtcagactgtttttgtataatctataaactgttttcataagctatcc 585  Q
    |||||| ||||||||  ||||  ||||||||||||||||||||||||||    
T  38462257 aagtcaaactgttttcatatatgctataaactgttttcataagctatcc 38462305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 596
Target Start/End: Original strand, 41724199 - 41724247
Alignment:
Q  549 ttttgtataatctataaactgttttcataagctatcc-tgagagcttat 596  Q
    |||| ||||| ||||||||||||||||| |||||||| |||||||||||    
T  41724199 ttttatataagctataaactgttttcatcagctatccttgagagcttat 41724247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 600
Target Start/End: Original strand, 42419980 - 42420037
Alignment:
Q  544 actgtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||||||||||||||||||| || ||||||||||||||||| || |||||||||||    
T  42419980 actgtttttgtataatctataagctattttcataagctatcctggatagcttatggaa 42420037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 537 - 600
Target Start/End: Complemental strand, 35486457 - 35486393
Alignment:
Q  537 aagtcagactgtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||| |||||||||||||||||||||| ||||||||  |||||||||| ||||| ||||||||    
T  35486457 aagtcaaactgtttttgtataatctataagctgttttcgcaagctatcctggagaggttatggaa 35486393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 583
Target Start/End: Complemental strand, 33931662 - 33931618
Alignment:
Q  539 gtcagactgtttttgtataatctataaactgttttcataagctat 583  Q
    |||||| ||||||||||||| |||||| |||||||||||||||||    
T  33931662 gtcagattgtttttgtataagctataagctgttttcataagctat 33931618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 588
Target Start/End: Original strand, 13866865 - 13866916
Alignment:
Q  537 aagtcagactgtttttgtataatctataaactgttttcataagctatcctga 588  Q
    |||||| ||||||||| |||||||||||| || ||||||| |||||||||||    
T  13866865 aagtcaaactgtttttatataatctataagctcttttcattagctatcctga 13866916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 562 - 603
Target Start/End: Complemental strand, 42817445 - 42817403
Alignment:
Q  562 ataaactgttttcataagctatcctg-agagcttatggaagta 603  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  42817445 ataaactgttttcataagctattctgaagagcttatggaagta 42817403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 585
Target Start/End: Original strand, 39621938 - 39621975
Alignment:
Q  548 tttttgtataatctataaactgttttcataagctatcc 585  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  39621938 tttttgtataatctataagctgttttcataagttatcc 39621975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 581
Target Start/End: Original strand, 9551555 - 9551599
Alignment:
Q  537 aagtcagactgtttttgtataatctataaactgttttcataagct 581  Q
    |||||| ||||||||||||||| |||||| || ||||||||||||    
T  9551555 aagtcaaactgtttttgtataaactataacctattttcataagct 9551599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 597
Target Start/End: Complemental strand, 10884594 - 10884554
Alignment:
Q  558 atctataaactgttttcataagctatcct-gagagcttatg 597  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  10884594 atctataagctgttttcataagctatcctagagagcttatg 10884554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 584
Target Start/End: Complemental strand, 33319899 - 33319859
Alignment:
Q  544 actgtttttgtataatctataaactgttttcataagctatc 584  Q
    ||||||||||||||  ||||||||||||||||||| |||||    
T  33319899 actgtttttgtatatactataaactgttttcataaactatc 33319859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 600
Target Start/End: Original strand, 36852472 - 36852512
Alignment:
Q  561 tataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  36852472 tataaactgttttcataagctatcttggagagcttatggaa 36852512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 516
Target Start/End: Complemental strand, 43965292 - 43965244
Alignment:
Q  468 cttatagcataagcgcttatcatatgagcgcttacgaataagctatttc 516  Q
    |||||||||||||| |||||||||| || | ||| ||||||||||||||    
T  43965292 cttatagcataagcacttatcatataagtgtttatgaataagctatttc 43965244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 554 - 600
Target Start/End: Complemental strand, 8651429 - 8651383
Alignment:
Q  554 tataatctataaactgttttcataagctatcctgagagcttatggaa 600  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  8651429 tataagctataaactgttttcataagctattctgggagcttatggaa 8651383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 587
Target Start/End: Original strand, 9106797 - 9106847
Alignment:
Q  537 aagtcagactgtttttgtataatctataaactgttttcataagctatcctg 587  Q
    |||||| |||||||||||||||||||||| || |||||||||| |||||||    
T  9106797 aagtcaaactgtttttgtataatctataagctattttcataagttatcctg 9106847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 600
Target Start/End: Original strand, 17368650 - 17368716
Alignment:
Q  535 tgaagtcagactgtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||||| ||||||||||| ||||||||||  ||||||||||||||||| | ||||| ||||||||    
T  17368650 tgaagtcaaactgtttttgtgtaatctataagttgttttcataagctatcttggagaggttatggaa 17368716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 516
Target Start/End: Original strand, 26516205 - 26516254
Alignment:
Q  467 gcttatagcataagcgcttatcatatgagcgcttacgaataagctatttc 516  Q
    |||||||||||||||||||||||||| || ||||| | ||||||||||||    
T  26516205 gcttatagcataagcgcttatcatataagtgcttatgtataagctatttc 26516254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 513
Target Start/End: Original strand, 31687931 - 31687978
Alignment:
Q  466 tgcttatagcataagcgcttatcatatgagcgcttacgaataagctat 513  Q
    ||||||||||||| ||||||||||||| || ||||| |||||||||||    
T  31687931 tgcttatagcataggcgcttatcatataagtgcttatgaataagctat 31687978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 554 - 600
Target Start/End: Complemental strand, 32408669 - 32408622
Alignment:
Q  554 tataatctataaactgttttcataagctatcctg-agagcttatggaa 600  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  32408669 tataagctataaactattttcataagctatcctgaagagcttatggaa 32408622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 596
Target Start/End: Original strand, 9174809 - 9174851
Alignment:
Q  554 tataatctataaactgttttcataagctatcctgagagcttat 596  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||    
T  9174809 tataagctataaactgttttcataagctattctgggagcttat 9174851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Complemental strand, 20982299 - 20982249
Alignment:
Q  466 tgcttatagcataagcgcttatcatatgagcgcttacgaataagctatttc 516  Q
    ||||||||||||||| ||||||||||| || ||||| | ||||||||||||    
T  20982299 tgcttatagcataagtgcttatcatataagtgcttatgtataagctatttc 20982249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 600
Target Start/End: Original strand, 4619690 - 4619747
Alignment:
Q  544 actgtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    ||||||| | ||||||||||||||||| ||||||||||||| | |||| |||||||||    
T  4619690 actgtttctatataatctataaactgtcttcataagctatcatggagaacttatggaa 4619747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 600
Target Start/End: Original strand, 30217077 - 30217122
Alignment:
Q  556 taatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||||    
T  30217077 taatctataagctgctttcataagctatcctggagagcttatggaa 30217122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 519
Target Start/End: Original strand, 42582818 - 42582871
Alignment:
Q  467 gcttatagcataagcgcttatcat-atgagcgcttacgaataagctatttccat 519  Q
    |||||||||||||||| ||||||| || |||||||| | |||||||||||||||    
T  42582818 gcttatagcataagcgtttatcataataagcgcttatgtataagctatttccat 42582871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 600
Target Start/End: Original strand, 16889711 - 16889775
Alignment:
Q  537 aagtcagactgtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||| ||||||||| || || |||||| ||||||||||||||||| || ||||| ||||||||    
T  16889711 aagtcaaactgtttttatagaagctataagctgttttcataagctatgctagagagtttatggaa 16889775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 581
Target Start/End: Complemental strand, 18857494 - 18857450
Alignment:
Q  537 aagtcagactgtttttgtataatctataaactgttttcataagct 581  Q
    |||||| | ||||||| |||||||||||| |||||||||||||||    
T  18857494 aagtcaaattgtttttctataatctataagctgttttcataagct 18857450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 40534102 - 40534150
Alignment:
Q  468 cttatagcataagcgcttatcatatgagcgcttacgaataagctatttc 516  Q
    ||||||||||||||||||||||||| ||  |||| | ||||||||||||    
T  40534102 cttatagcataagcgcttatcatataaggacttatgtataagctatttc 40534150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 544 - 600
Target Start/End: Original strand, 35017559 - 35017616
Alignment:
Q  544 actgtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||||| ||||||||||||  ||||||||||||||| |||| ||||||||||||||    
T  35017559 actgttttcgtataatctatatgctgttttcataagctgtcctggagagcttatggaa 35017616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 584
Target Start/End: Complemental strand, 7137081 - 7137045
Alignment:
Q  548 tttttgtataatctataaactgttttcataagctatc 584  Q
    |||||||||||||||||| ||||||||||||||||||    
T  7137081 tttttgtataatctataagctgttttcataagctatc 7137045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 597
Target Start/End: Original strand, 7472296 - 7472348
Alignment:
Q  546 tgtttttgtataatctataaactgttttcataagctatcct-gagagcttatg 597  Q
    |||||||||||||||||||| |||||| ||||||||||| | |||||||||||    
T  7472296 tgtttttgtataatctataagctgtttccataagctatcttggagagcttatg 7472348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 600
Target Start/End: Original strand, 6279384 - 6279439
Alignment:
Q  546 tgtttttgtataatctataaactgttttcataagctatcct-gagagcttatggaa 600  Q
    |||||| |||||| || |||||| ||||||||||||||||| ||||||||||||||    
T  6279384 tgttttcgtataagctttaaactattttcataagctatcctagagagcttatggaa 6279439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 516
Target Start/End: Complemental strand, 47885171 - 47885122
Alignment:
Q  467 gcttatagcataagcgcttatcatatgagcgcttacgaataagctatttc 516  Q
    |||||||||||||||||||||||||| |  ||||| ||||||| ||||||    
T  47885171 gcttatagcataagcgcttatcatataattgcttatgaataagttatttc 47885122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 586
Target Start/End: Complemental strand, 33527240 - 33527192
Alignment:
Q  538 agtcagactgtttttgtataatctataaactgttttcataagctatcct 586  Q
    ||||| ||||||||  |||||||||||| ||||||||||||| ||||||    
T  33527240 agtcaaactgttttcatataatctataagctgttttcataagttatcct 33527192  T

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