View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759-Insertion-8 (Length: 563)
Name: NF4759-Insertion-8
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 267
Target Start/End: Complemental strand, 43895516 - 43895400
Alignment:
| Q |
144 |
atggatttggtgttgtaaagtacaacacagtttttatttcagccattggatggtttcgataataaaattataatagtactatgataccaataaagatcca |
243 |
Q |
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| T |
43895516 |
atggatttggtgctgtaaagtacaacacagttttcatttcagccagtggatggttt-gatgat---attataatagtac---cataccaataaaaatcca |
43895424 |
T |
|
| Q |
244 |
atggttataattgaaaactgtgtg |
267 |
Q |
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|| || |||||| ||||||||||| |
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| T |
43895423 |
atagtcataattcaaaactgtgtg |
43895400 |
T |
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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 12024424 - 12024540
Alignment:
| Q |
144 |
atggatttggtgttgtaaagtacaacacagtttttatttcagccattggatggtttcgataataaaattataatagtactatgataccaataaagatcca |
243 |
Q |
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| T |
12024424 |
atggatttggtgttgtaaagtacaacacagttttcatttcagccattggatgattt-gataat---attacaatag---tatcatgccaataaagatcca |
12024516 |
T |
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| Q |
244 |
atggttataattgaaaactgtgtg |
267 |
Q |
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||||| | |||| ||||| ||||| |
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| T |
12024517 |
atggtcacaatttaaaacagtgtg |
12024540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 33813700 - 33813645
Alignment:
| Q |
144 |
atggatttggtgttgtaaagtacaacacagtttttatttcagccattggatggttt |
199 |
Q |
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| T |
33813700 |
atggatttggtgctgtaaagtacaacacagtttttatttcagctattggatggttt |
33813645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 271
Target Start/End: Complemental strand, 45167745 - 45167622
Alignment:
| Q |
139 |
tgaaaatggatttggtgttgtaaagtacaacacagtttttatttcagccattggatggtttcgataataaaattataatagtactatgataccaataaag |
238 |
Q |
| |
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||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||| | ||| |||||| ||||| || ||||||||| |
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| T |
45167745 |
tgaaaatggatttggtgctgtaaaaagcaacacagtttttatctca-ccattggatggttgg----acaaagttataacagtaccat----ccaataaag |
45167655 |
T |
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| Q |
239 |
atccaatggttataattgaaaactgtgtggttt |
271 |
Q |
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| T |
45167654 |
atccaatggttataattgaaaactgtgttgttt |
45167622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 267
Target Start/End: Complemental strand, 34988603 - 34988488
Alignment:
| Q |
144 |
atggatttggtgttgtaaagtacaacacagtttttatttcagccattggatggtttcgataataaaattataatagtactatgataccaataaagatcca |
243 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||| |||||| | ||||||||| | ||| |||||||||||||| |
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| T |
34988603 |
atggatttggtgctgtaaagtacaacacag-tttcaattcagccattggatggttt-gataat---actataatagtcccatg---ccaataaagatcca |
34988512 |
T |
|
| Q |
244 |
atggttataattgaaaactgtgtg |
267 |
Q |
| |
|
||||| | |||| |||||| |||| |
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|
| T |
34988511 |
atggtcacaattcaaaactttgtg |
34988488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 30203323 - 30203286
Alignment:
| Q |
142 |
aaatggatttggtgttgtaaagtacaacacagttttta |
179 |
Q |
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|||||||||||||||||||| |||||||||| |||||| |
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| T |
30203323 |
aaatggatttggtgttgtaatgtacaacacaattttta |
30203286 |
T |
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