View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759-Insertion-9 (Length: 535)
Name: NF4759-Insertion-9
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759-Insertion-9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 253 - 535
Target Start/End: Original strand, 612528 - 612810
Alignment:
| Q |
253 |
catatgagaggtgtgtgtatatttgagtcaaaaattatataattgtgttactcccatacgcaggcaaagagaaacaaactatttgaagaaaaacttgttt |
352 |
Q |
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| T |
612528 |
catatgagaggtgtgtgtatatttgagtcaaaaattatataattgtgttactcccatacgcaggcaaagagaaacaaactatttgaagaaaaacttgttt |
612627 |
T |
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| Q |
353 |
tgaagccgatcaaggagagattcattaaggttgtcatttccataacctttgatcgggattttgaacaagtttggaaaatgaggcaaagagcaatggattt |
452 |
Q |
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| T |
612628 |
tgaagccgatcaaggagagattcattaaggttgtcatttccataacctttgatcgggattttgaacaagtttggaaaatgaggcaaagagcaatggattt |
612727 |
T |
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| Q |
453 |
tcttcgaaggccggtgcggagaagagttcatgatgcgttgtggtgggcattgtgctgtgcactggttcttgtctttatctata |
535 |
Q |
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| T |
612728 |
tcttcgaaggccggtgcggagaagagttcatgatgcgttgtggtgggcattgtgctgtgcactggttcttgtctttatctata |
612810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 612261 - 612499
Alignment:
| Q |
8 |
cctgaatcatgaatgtttgatatataccagctcattgatttatccagtttctttatgcatgcaactttggtcttttttcttataattgtgtcgagtatcc |
107 |
Q |
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| T |
612261 |
cctgaatcatgaatgtttgatatataccagctcattgatttatccggtttctttatgtatgcaactttggtcttgtttcttataattctgtcaagtatcc |
612360 |
T |
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| Q |
108 |
t---aatggccagatatcacacattttaaatatagaaaaacagggtgtttgaggttcgaacctgcatatatctttacatagctaaactcacgttactata |
204 |
Q |
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| T |
612361 |
ttctaatggtcagagatcacacattttaaatatagaaaaacagggtgtttgaggttcgaacctgcatatatccttacagagctaaactcacgttactata |
612460 |
T |
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| Q |
205 |
ttatattgaatttttcaaattcatgagttatttctatac |
243 |
Q |
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| T |
612461 |
ttatattaaatttttcaaattcatgagttatttctatac |
612499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 535
Target Start/End: Original strand, 4618079 - 4618189
Alignment:
| Q |
422 |
tttggaaaatgaggcaaagagcaatggattttcttcgaaggccggtgcggagaagagttcatgatgcgttgtggtgggcattgtgctgtgcactggttct |
521 |
Q |
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| T |
4618079 |
tttggaaaatgaggcgtagagcaacagattttc---gaaggccagtacggagaaaggttcctgatgcattgtggtgggcattatgctgtgcagttattct |
4618175 |
T |
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| Q |
522 |
tgtctttatctata |
535 |
Q |
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| T |
4618176 |
tctatttatctata |
4618189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 3350759 - 3350804
Alignment:
| Q |
120 |
atcacacattttaaatatagaaaaacagggtgtttgaggttcgaac |
165 |
Q |
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| T |
3350759 |
atcacacattttaaatgtagaaaaatagggtgtttggggttcgaac |
3350804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 31298657 - 31298701
Alignment:
| Q |
121 |
tcacacattttaaatatagaaaaacagggtgtttgaggttcgaac |
165 |
Q |
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| T |
31298657 |
tcacacattttaaatatagagaaataggatgtctgaggttcgaac |
31298701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 37477683 - 37477643
Alignment:
| Q |
364 |
aaggagagattcattaaggttgtcatttccataacctttga |
404 |
Q |
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| T |
37477683 |
aaggaaagattcatcaaggttgtcatttccataaccgttga |
37477643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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