View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_high_12 (Length: 291)
Name: NF4759_high_12
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 20015248 - 20015529
Alignment:
| Q |
8 |
tccaatggatattaatacaggaatggttcttttaaatctaatggatattaatcgttccttttatcttataataagttatttactatgtttccgtgatcat |
107 |
Q |
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| T |
20015248 |
tccaatggatattaatacaggaatggttcttttaaatctaatggatattaatcgttccttttatcttataataaaacatttattatgtttccgtgatcat |
20015347 |
T |
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| Q |
108 |
agctcagttggtatacatgtg-tgatatgcaaagaccgaattttaaatcgtgaatccccacttaccattcttaaagagtgaatctcttgccactaaatta |
206 |
Q |
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| T |
20015348 |
agctcagttggcatacatgtggtgatatgcaaagaccgaattttaaatcgtgaatccccacttaccattcttaaagagtgaatctcttgccactaaatta |
20015447 |
T |
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| Q |
207 |
tttgaccaaaaaacacattactctcgattgaagcacccct--cacacacacggttaaaataaaggattaatatatgtttact |
286 |
Q |
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| T |
20015448 |
tttgacaaaaaaacacattactctcgattgaagcacccctcacacacacacggttaaaataaaggattaatatatgtttact |
20015529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 20015227 - 20015263
Alignment:
| Q |
23 |
tacaggaatggttcttttaaatctaatggatattaat |
59 |
Q |
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| T |
20015227 |
tacagaaatggttcttttaaatccaatggatattaat |
20015263 |
T |
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