View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_high_17 (Length: 251)
Name: NF4759_high_17
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14241538 - 14241779
Alignment:
| Q |
1 |
tgagtcaaaaaataaatatttatgaaaattaagtaaggatgtagaaaatagataagaaaatgaactcacttggaagatggttctgccacgaccaaatatg |
100 |
Q |
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| T |
14241538 |
tgagtcaaaaaataaatatttatgaaaattaagtaaggatgtagaaaatagataagaaaatgaactcacttggaagatggttctgccacgaccaaatatg |
14241637 |
T |
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| Q |
101 |
aaatcaatggaaccttgaatgt---aacaagactcgtagtaatgtcttcctttgtaatcaaagagcgtgttgtgtgaactataaaatgcacaatgataaa |
197 |
Q |
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| T |
14241638 |
aaatcaatggaaccttgaatgtaacaacaagactcgtagtaatgtcttcctttgtaatcaaagagcgtgttgtgtgaactataaaatgcacaatgataaa |
14241737 |
T |
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| Q |
198 |
atgctgctttttctgctgccacagattgattttgtgaagtat |
239 |
Q |
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| T |
14241738 |
atgctgctttttctgctgccacatattgattttgtgaagtat |
14241779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 12957431 - 12957222
Alignment:
| Q |
11 |
aataaatatttatgaaaattaagtaaggatgtagaaaatagataagaaaatgaactcacttggaagatggttctgccacgaccaaatatgaaatcaatgg |
110 |
Q |
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| T |
12957431 |
aataaatatttatgaaaattaagtcatgatatataaaagagatgtgacaataaactcacttggaagatggttctgccacgaccaaatatgaaatcaatgg |
12957332 |
T |
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| Q |
111 |
aaccttgaatgtaacaagactcgtagtaatgtcttcctttgtaatcaaagagcgtgttgtgtgaactataaaatgcacaatgataaaatgctgctttttc |
210 |
Q |
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| T |
12957331 |
agccttgaatgtaacaagactcatagtaatgtctacctttgtaatcaaagagtgtgttgtgtgtactgtaaaatgcacaatgataaaatgcagctttctc |
12957232 |
T |
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| Q |
211 |
tgctgccaca |
220 |
Q |
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|||||||||| |
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| T |
12957231 |
tgctgccaca |
12957222 |
T |
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