View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_high_6 (Length: 403)
Name: NF4759_high_6
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 51192584 - 51192290
Alignment:
| Q |
1 |
ctttaaaatggggttgtcacccaggaagattttgaagatgcacccccaaatcccatatgataacgtcactgttagagactcggaaatttctctcaattca |
100 |
Q |
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| T |
51192584 |
ctttaaaatggggttgtcacccaggaagattttgaagatgcacccccaattcccatatgataccgtcattgttagagactcgaaaatttctctcaattca |
51192485 |
T |
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| Q |
101 |
ttctctggtcaatcccattatatctacaaagcactaaggttgatacaaacatcgtctatgacactgctaatgtcaaaagcttaggagttagaatgccgac |
200 |
Q |
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| T |
51192484 |
ttctctggtcaatcccattatatctacaaagaactaaggttgatacgaacatcgtctatgacactactaatgtcaaaagcttagg-------atgccgac |
51192392 |
T |
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| Q |
201 |
acaaataaatttatacttgtcatgattaaataatatataaacatattttacaaattatgagtgaaaatttacatatgcatgtaagttgtgcaatttattt |
300 |
Q |
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| T |
51192391 |
acaaatacatttatacttgtcatgattaaataatatataaacatattttacaaatcatgagtgaaaatttacatatgcatgtaaattgtgcaatttattt |
51192292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 307 - 389
Target Start/End: Complemental strand, 51212019 - 51211937
Alignment:
| Q |
307 |
tttccacaacgagtaagaatgactagaaccttagccaatgtctgggtctgaattatatttatgcacctcctaaacacaggttc |
389 |
Q |
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| T |
51212019 |
tttccacaatgagtaagaatgactagaaccttagccaatgtctgggtctgaattatatttatgcacctcctaaacacaggttc |
51211937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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