View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4759_high_8 (Length: 324)
Name: NF4759_high_8
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 32766375 - 32766299
Alignment:
| Q |
142 |
gatgagcttattttttcctttctaaatcaaccatgatataaaatgtaattgaattgttatatgattataaatcttag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32766375 |
gatgagcttattttttcctttctaaatcaaccataatataaaatgtaattgaattgttatatgattatagatcttag |
32766299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 32766430 - 32766378
Alignment:
| Q |
50 |
agccacaccatttaacaaacagaagatcaattaaataattgttaatcctcccc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32766430 |
agccacaccatttaacaaacagaagatcaattaaataattgttaatcctcccc |
32766378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 32766928 - 32766863
Alignment:
| Q |
153 |
tttttcctttctaaatcaaccatgatataaaatgtaattgaattgttatatgattataaatcttag |
218 |
Q |
| |
|
||||||||||||||||||| |||| |||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
32766928 |
tttttcctttctaaatcaaacatgttatacaatgtaattggatggttatatgattataaatcttag |
32766863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 32756870 - 32756807
Alignment:
| Q |
24 |
caggaaattgatgcacaaaatcaaagagccacaccatttaacaaacagaagatcaattaaataa |
87 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||| |||||||||||||| || |||| |||||||| |
|
|
| T |
32756870 |
caggaaatcgatgcacataatcaaaaagccatgccatttaacaaacaaaaaatcatttaaataa |
32756807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 32766246 - 32766211
Alignment:
| Q |
271 |
aaaatcttaaactccaacatagtctacgaaaactct |
306 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32766246 |
aaaatcttaaactccaacattgtctacgaaaactct |
32766211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University