View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4759_high_9 (Length: 323)
Name: NF4759_high_9
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 39279307 - 39279600
Alignment:
| Q |
15 |
atcataagtcaaaggtttctaaagctgaaagtcgggctgaaagtgcagaggaaaattgtatcatattgtctgaatgcaatgatgaattgaatgaggaatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39279307 |
atcataagtcaaaggtttctaaagctgaaagtcgggctgaaagtgcagaggaaaattgtatcatattgtctgaatgcaatgatgaattgaatgaggaatt |
39279406 |
T |
|
| Q |
115 |
aaagttcttgaggattggattcaaaaatatggaggaatccttggtccgagagaaggaagaaaaaatgacgactgcaaaggacataggaatgcgggcaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39279407 |
aaagttcttgaggattggattcaaaaatatggaggaatccttggtccgagagaaggaagaaaaaatgacgactgcaaaggacataggaatgcgggcaaaa |
39279506 |
T |
|
| Q |
215 |
ctttttaaagagttagtaaaacaactggttattgagagagagcgtcttaaagatcaggtatgtgccacgatagagaatacatttcatgttaact |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39279507 |
ctttttaaagagttagtaaaacaactggttattgagagagagcgtcttaaagatcaggtatgtgccacgatagagaatacatttcatgttaact |
39279600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 31465102 - 31464995
Alignment:
| Q |
100 |
attgaatgaggaattaaagttcttgaggattggattcaaaaatatggaggaatccttggtccgagagaaggaagaaaaaatgacgactgcaaaggacata |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |||| ||||| | ||| |||| || ||| |
|
|
| T |
31465102 |
attgaatcaggaattaaagttcttgaggattggattaaaaaatatggaggaatccttgcgcggagagaatgaagcaaaaacaagaactacaaaagatata |
31465003 |
T |
|
| Q |
200 |
ggaatgcg |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
31465002 |
ggaatgcg |
31464995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 31464992 - 31464933
Alignment:
| Q |
248 |
gagagagagcgtcttaaagatcaggtatgtgccacgatagagaatacatttcatgttaac |
307 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
31464992 |
gagagagagcatcttaaagatcaggaatgtgccaagatagagaatacatttcatgttaac |
31464933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 5662894 - 5663003
Alignment:
| Q |
19 |
taagtcaaaggtttctaaagctgaaagtcgggctgaaagtgcagaggaaaattgtatcatattgtctgaatgcaatgatgaattgaatgaggaattaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||||||| || ||||||||||| ||||||| |||| ||| || || |||||| ||| |
|
|
| T |
5662894 |
taagtcaaaggtttctaaagctgagagtctagctgacagtgcagaggacaagtgtatcatattatctgaatctaatgctgatttaaacgaggaagtaagt |
5662993 |
T |
|
| Q |
119 |
ttcttgagga |
128 |
Q |
| |
|
|||||||||| |
|
|
| T |
5662994 |
ttcttgagga |
5663003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University