View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_low_1 (Length: 1016)
Name: NF4759_low_1
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 683; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 210 - 1003
Target Start/End: Complemental strand, 7881241 - 7880441
Alignment:
| Q |
210 |
aggttctgggttgggatctatggatggaaattagtgggctttgtttattgaccattttgtgcatctgggttgttgtttgattttgtataattttcaagtt |
309 |
Q |
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| T |
7881241 |
aggttctgggttgggatctatggatggaaattagtgggctttgtttattgaccattttgtgcatctgggttgttgtttgattttgtataattttcaagtt |
7881142 |
T |
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| Q |
310 |
ttttctgaaaatgtagannnnnnnaaagtaatgccaatttgggaatgatacactgattgcatttgttggtaagaggcagaatttagcaaaaagttattgt |
409 |
Q |
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| T |
7881141 |
ttttctgaaaatgtagatttttttaaagtaatgccaatttgggaatgatacactgattgcatttgttggtaagaggcagaatttagcaaaaag--attgt |
7881044 |
T |
|
| Q |
410 |
tttgagattttttattttctt-------atagagaatctacattctgactttgggatttcttgtgtgcagttttgttgattatgattggttttttgacga |
502 |
Q |
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| T |
7881043 |
tttgagattttt-attttgtttgtagttatagagaatctacattctgactttgggatttcttgtgtgcagttttgttgattatgattggttttttgacga |
7880945 |
T |
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| Q |
503 |
aaatgacggtgaaactggaaatgatctgaagagtggtgtaagtgttaccttaaatagacaaaaatgaggtctgacacacttcttgactatgctgtgttgc |
602 |
Q |
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| T |
7880944 |
aaatgacggtgaaactggaaatgatctgaagagtggtgtaagtgttaccttaaatagacaaaaatgaggtctgacacacttcttgactatgctgtgttgc |
7880845 |
T |
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| Q |
603 |
aattgtctccgaagcgttcaaggtgcggataacattcattggattttctgcttgttatatgctttttcttctgactagagttatgatcgtgtttcgttgt |
702 |
Q |
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| T |
7880844 |
aattgtctccgaagcgttcaaggtgcggataacattcattggattttctgcttgttatatgctttttcttctgactagagttatgatcgtgtttcgttgt |
7880745 |
T |
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| Q |
703 |
ttttctctctctctttatatgttaaattggcagatgtgagttgcttgtttcaagtgatggattcaccgagaaactagcatcagggttagtgaagccatac |
802 |
Q |
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| T |
7880744 |
tttt-tct-tctctttatatgttaaattggcagatgtgagttgcttgtttcaagtgatggattcaccgagaaactagcatcagggttagtgaagccatac |
7880647 |
T |
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| Q |
803 |
ctggaccatttaaagtttgcagaggagcaggctgcacattctgtgcagtcaatcaggctagaaattgatagacgtagaaatgccgagacatggtttacaa |
902 |
Q |
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| T |
7880646 |
ttggaccatttaaagtttgcagaggagcaggctgcacattctgtgcagtcaatcaggctagaaattgatagacgtagaaatgccgagacatggtttacaa |
7880547 |
T |
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| Q |
903 |
aaggaacatttgagaggtgaagttcatgtcaactttcataggatttga----tttgcatctggtgaaccttttgatttac-ttttggctggttggtgttg |
997 |
Q |
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| T |
7880546 |
aaggaacgtttgagaggtgaagttcatgtcaactttcataggatttgatttgtttgcatccggtgaaccttttgatttactttttggctggttggtgttg |
7880447 |
T |
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| Q |
998 |
atgatg |
1003 |
Q |
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| T |
7880446 |
atgatg |
7880441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 7881365 - 7881329
Alignment:
| Q |
87 |
gaagtatgcaactttagtactttagtcaaatttggtc |
123 |
Q |
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| T |
7881365 |
gaagtatgcaactttagtactttagtcaaatttggtc |
7881329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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