View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_low_15 (Length: 290)
Name: NF4759_low_15
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 12957431 - 12957720
Alignment:
| Q |
1 |
taatgattatgatttttcttatgcagaattgtgagatatttgtggttgatgacaaaaggatatcaattcgtgggtcaattacagatgcaaatagagaaaa |
100 |
Q |
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| T |
12957431 |
taatgattatgatttttcttatgcagaattgtgagatatttgtggttgatgacaaaaggatatcaattcgtgggtcaattacagctgcaaatagagaaaa |
12957530 |
T |
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| Q |
101 |
tgaaagtgagatgagtggatttatatttatcaaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcatt |
200 |
Q |
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| T |
12957531 |
tgaaagtgagatgagtggatttatatttatcaaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcatt |
12957630 |
T |
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| Q |
201 |
tttgctaagacatacctctccaaaaccgttgtcccagaaggatggaccaattggagttacgacggtagcacagagtaagaacattatcat |
290 |
Q |
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| T |
12957631 |
tttgctaagacatacctctccaaaaccattgtcccagaaggatggaccaattggagttatgatggtagcactgagtaagaacattatcat |
12957720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 14241523 - 14241232
Alignment:
| Q |
1 |
taatgattatgattt-ttcttatgcagaattgtgagatatttgtggttgatgacaaaaggatatcaattcgtgggtcaattacagatgcaaatagagaaa |
99 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
14241523 |
taatgattatgatttatttttatgcagaattgtgagatatttgtggttgatgacaaaaggatattaattcgtgggtcaattacagctgcaaatagagaaa |
14241424 |
T |
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| Q |
100 |
atgaaagtgagatgagtggatttatatttatcaaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcat |
199 |
Q |
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| T |
14241423 |
atgaaagtgagatgagtggatttatatttgtcaaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcat |
14241324 |
T |
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| Q |
200 |
ttttgctaagacatacctctccaaaaccgttgtcccag-aaggatggaccaattggagttacgacggtagcacagagtaagaacattatcat |
290 |
Q |
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|||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
14241323 |
ttttgctaagacatacctcttcaaaaccgttgttccagaaaggatggaccaattggagttatgacggtagcacagaataagagcattatcat |
14241232 |
T |
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