View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_low_17 (Length: 253)
Name: NF4759_low_17
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_low_17 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 34719968 - 34719732
Alignment:
| Q |
18 |
gattccagcatgtggatctcaaactta-gactgtgaagatagcgaccgctttcaagaatttcaatgttcttagaaccttgagtcgtgttttcactggttg |
116 |
Q |
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| T |
34719968 |
gattccagcatgtggatctcaaactcaagactgtgaagatagcaaccgctttcaagaatttcaatgttcttagaaccttgagtcgtgttttcactagttg |
34719869 |
T |
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| Q |
117 |
gactaacaggattgttctcaccccaaatagtttaaatctaacaaatttacaggcaaggtagattccatctcatgatttctgatttgtaggacctaaattt |
216 |
Q |
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| T |
34719868 |
gactaacatgattgttctcaccccaaatagtttaaatctaacaaatttacaggcaaggtagattccatctcatgatttctgatttgtaggacctaaattt |
34719769 |
T |
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| Q |
217 |
tcgttctaatgactatgtttactatctctctcttctc |
253 |
Q |
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| T |
34719768 |
tcgttgtaatgactatgtttactatctgtctcttctc |
34719732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 244
Target Start/End: Complemental strand, 34729392 - 34729251
Alignment:
| Q |
103 |
gttttcactggttggactaacaggattgttctcaccccaaatagtttaaatctaacaaatttacaggcaaggtagattccatctcatgatttctgatttg |
202 |
Q |
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| T |
34729392 |
gttttcactatttggattaatatgaatgttcttactctaaatagtttcaacctaataaatttataggcaagctagattccatctcatgatttcttattta |
34729293 |
T |
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| Q |
203 |
taggacctaaattttcgttctaatgactatgtttactatctc |
244 |
Q |
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| T |
34729292 |
taggacctaaatttttgttgtaatgactatgtttattatctc |
34729251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 34725272 - 34725200
Alignment:
| Q |
158 |
caaatttacaggcaaggtagattccatctcatgatttctgatttgtaggacctaaattttcgttctaatgacta |
231 |
Q |
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| T |
34725272 |
caaacttacaggcaacgaagattc-atctcacgatttcttatttgtaggacctaaattttcgttgtaataacta |
34725200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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