View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4759_low_2 (Length: 591)

Name: NF4759_low_2
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4759_low_2
NF4759_low_2
[»] chr7 (6 HSPs)
chr7 (25-379)||(42029858-42030212)
chr7 (409-575)||(42030237-42030413)
chr7 (37-110)||(10325121-10325194)
chr7 (141-214)||(712131-712204)
chr7 (44-84)||(717501-717541)
chr7 (30-82)||(40901853-40901905)
[»] chr1 (3 HSPs)
chr1 (30-132)||(51080720-51080822)
chr1 (30-82)||(2536530-2536582)
chr1 (30-82)||(11351645-11351697)
[»] chr2 (2 HSPs)
chr2 (30-132)||(40287065-40287167)
chr2 (30-82)||(29894369-29894421)
[»] chr3 (3 HSPs)
chr3 (37-93)||(38998907-38998963)
chr3 (37-84)||(27265807-27265854)
chr3 (30-82)||(36684916-36684968)
[»] chr6 (3 HSPs)
chr6 (37-84)||(13757556-13757603)
chr6 (37-84)||(19047096-19047143)
chr6 (30-82)||(942704-942756)
[»] chr5 (2 HSPs)
chr5 (30-84)||(14856970-14857024)
chr5 (48-132)||(32163040-32163124)
[»] chr8 (2 HSPs)
chr8 (40-85)||(14541224-14541269)
chr8 (41-133)||(11911423-11911515)
[»] chr4 (2 HSPs)
chr4 (41-84)||(2087389-2087432)
chr4 (30-82)||(1394136-1394188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (30-82)||(48113-48165)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 25 - 379
Target Start/End: Original strand, 42029858 - 42030212
Alignment:
Q  25 gtatcaattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataat 124  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  42029858 gtatcaattcacgagcgaccccattaatttgcctcatattaaattcaacatgagagtttttgaaactattatggaacatctgtctatatgcagaaataat 42029957  T
Q  125 acaaccaaatgagtctacaacattcttaaagtcgagagcaaaatccaaattataaagttgaaggtctaatgttcatttcaaagtcgtatgcaaaccaaat 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42029958 acaaccaaatgagtctacaacattcttaaagtcgagagcaaaatccaaattataaagttgaaggtctaatgttcatttcaaagtcgtatgcaaaccaaat 42030057  T
Q  225 gcttccgttatttcatcatcacatacacagaggagaaaaccaagtatctcaattcctactatgttaagtgaaaaggaaaatgacttataacgtccgattg 324  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42030058 gcttccgttatttcatcatcacatacatagaggagaaaaccaagtatctcaattcctactatgttaagtgaaaaagaaaatgacttataacgtccgattg 42030157  T
Q  325 ctggcttttctcatgacaaacaatgcatacatacctattgtccaccagaatgcaa 379  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42030158 ctggcttttctcatgacaaccaatgcatacatacctattgtccaccagaatgcaa 42030212  T

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Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 409 - 575
Target Start/End: Original strand, 42030237 - 42030413
Alignment:
Q  409 taggttctaaaataaattacacagtacataaaaattgatctcacgccacttaaaccaacccccttgttgtc----------acgccagattacatatatg 498  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||          |||||||||||||||||||    
T  42030237 tagggtctaaaataaattacacagtacataaaaattgatctcacgccacttaacccaacccccttgttgtccacgcggaccacgccagattacatatatg 42030336  T
Q  499 gtaacgctcttaccccttgtccacgccaccttatattacgctcataaaccctttgtctgtcatcaataacacaaaac 575  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42030337 gtaacgctcttaccccttgtccacgccaccttatattacgctcataaaccctttgtctgtcatcaatatcacaaaac 42030413  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 10325121 - 10325194
Alignment:
Q  37 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtcta 110  Q
    |||||||| |||| ||||||||| |||||||||| ||||||||||| || |||| |||||| |||| |||||||    
T  10325121 gagcgacctcattcgtttgcctcctattaaactcgacatgagagttgtttaaacaattaagtaacaattgtcta 10325194  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 712204 - 712131
Alignment:
Q  141 acaacattcttaaagtcgagagcaaaatccaaattataaagttgaaggtctaatgttcatttcaaagtcgtatg 214  Q
    ||||| |||||| |||| ||||||||||| | ||||| || |||||||| | |||| |||| ||||||||||||    
T  712204 acaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgtccattccaaagtcgtatg 712131  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 717541 - 717501
Alignment:
Q  44 cccattagtttgcctcatattaaactcaacatgagagtttt 84  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  717541 cccattagcttgtctcctattaaactcaacatgagagtttt 717501  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 40901853 - 40901905
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 82  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||    
T  40901853 aattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagtt 40901905  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 51080720 - 51080822
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 129  Q
    |||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  51080720 aattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 51080819  T
Q  130 caa 132  Q
    |||    
T  51080820 caa 51080822  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 2536530 - 2536582
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 82  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  2536530 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 2536582  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 11351645 - 11351697
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 82  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  11351645 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 11351697  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 40287065 - 40287167
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 129  Q
    |||||| ||| ||||||||||| |||||||||||||||||  |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  40287065 aattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 40287164  T
Q  130 caa 132  Q
    |||    
T  40287165 caa 40287167  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 29894369 - 29894421
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 82  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  29894369 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 29894421  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 38998963 - 38998907
Alignment:
Q  37 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactat 93  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||    
T  38998963 gagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactat 38998907  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 27265854 - 27265807
Alignment:
Q  37 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 84  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  27265854 gagcgacctcattagtttgtctcttattaaactcaacatgagagtttt 27265807  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 36684968 - 36684916
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 82  Q
    |||||| ||||||||||||||| ||||||| |||| ||||| |||||||||||    
T  36684968 aattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagtt 36684916  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 13757556 - 13757603
Alignment:
Q  37 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 84  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  13757556 gagcgacctcattagtttgcttcttattaaactcaacatgagagtttt 13757603  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 19047143 - 19047096
Alignment:
Q  37 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 84  Q
    |||||||| |||||| ||||||| |||||||||| |||||||||||||    
T  19047143 gagcgaccacattagcttgcctcctattaaactcgacatgagagtttt 19047096  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 942756 - 942704
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 82  Q
    |||||||||||||||||||| | ||||||| |||| ||||| |||| ||||||    
T  942756 aattcacgagcgaccccattggcttgcctcctattgaactcgacattagagtt 942704  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 14856970 - 14857024
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 84  Q
    |||||| |||||| | |||| |||||||||||||||||||| |||||||||||||    
T  14856970 aattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagtttt 14857024  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 32163124 - 32163040
Alignment:
Q  48 ttagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaa 132  Q
    |||||||||||| |||||||||| | |||||||||||  |||||||   | ||||  |||||| | |||| ||||||||||||||    
T  32163124 ttagtttgcctcctattaaactcgatatgagagttttgaaaactatcctgaaacaactgtctacaggcagtaataatacaaccaa 32163040  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 14541269 - 14541224
Alignment:
Q  40 cgaccccattagtttgcctcatattaaactcaacatgagagttttt 85  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||    
T  14541269 cgaccacattagtttgcctcatattaaactcaatacgagagttttt 14541224  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 11911423 - 11911515
Alignment:
Q  41 gaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaaa 133  Q
    ||||||||| |||| |||| |||| ||||| |||||||||||||  ||||||||||  |||  ||||||| || || | || |||||||||||    
T  11911423 gaccccattcgtttacctcctattgaactcgacatgagagttttgaaaactattaattaactattgtctacatacaaatatgatacaaccaaa 11911515  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 2087389 - 2087432
Alignment:
Q  41 gaccccattagtttgcctcatattaaactcaacatgagagtttt 84  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||    
T  2087389 gaccccattagtttgcctcgtattaaatttaacatgagagtttt 2087432  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 1394188 - 1394136
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 82  Q
    |||||| || |||||||||||| ||||||| |||| ||||| |||||||||||    
T  1394188 aattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagtt 1394136  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 48165 - 48113
Alignment:
Q  30 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 82  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||    
T  48165 aattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagtt 48113  T

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