View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4759_low_20 (Length: 246)
Name: NF4759_low_20
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 43513473 - 43513691
Alignment:
| Q |
13 |
tgagctggacgaagaagacggaggaggagataatttcttgaatgatttgggcggtgaaagaatggctctgatcttcaatggatgaattaatgatgaagaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43513473 |
tgagctggacgaagaagacggaggaggagataatttcttgaatgatttgggcggtgaaagaatggctctgatcttcaatggatgaattaatgatgaagaa |
43513572 |
T |
|
| Q |
113 |
gcgcgatcgtattcttcaattatatttttcagatcttcatcgctggtgattgaaatcaatgtctctaaatctccgtttggtaatggacatttcagtgtga |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43513573 |
gctcgatcgtattcttcaattatatttttcagatcttcatcgctggtgattgaaatcaatgtctctaaatctccgtttggtaatggacatttcagtgtga |
43513672 |
T |
|
| Q |
213 |
ctgatgaaccacataattc |
231 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43513673 |
ctgatgaaccacataattc |
43513691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 34589551 - 34589607
Alignment:
| Q |
145 |
atcttcatcgctggtgattgaaatcaatgtctctaaatctccgtttggtaatggaca |
201 |
Q |
| |
|
|||||||||| ||||||| |||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
34589551 |
atcttcatcgttggtgatggaaatcaacgtttctaaatctccgtttggtaattgaca |
34589607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University