View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_low_22 (Length: 234)
Name: NF4759_low_22
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 53168611 - 53168410
Alignment:
| Q |
19 |
ctgtcatgtactttt--gtaagcatatgacattaatcaataccgtaaatatcaattgggggttcacatgtactcttttaaatgcatactcctaaaataag |
116 |
Q |
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| T |
53168611 |
ctgtcatgtacttttttgtaagcatatgacattaatcaataccgtaaatatcaattgggggttcacatgtactcttttaaatgcatactcctaaaataag |
53168512 |
T |
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| Q |
117 |
aactaaatccaaggacatacaaagtttgatagttgaggtttaaagaatccttttgttttggttacccattctagtacgtttgtttttagtcacggcattc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53168511 |
aactaaatccaaggacatacaaagtttgatagttgaggtttaaagaatccttttgttttggttaccccttctagtacgtttgtttttagtcacggcattc |
53168412 |
T |
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| Q |
217 |
at |
218 |
Q |
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|| |
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| T |
53168411 |
at |
53168410 |
T |
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