View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_low_4 (Length: 503)
Name: NF4759_low_4
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 253 - 485
Target Start/End: Complemental strand, 35317242 - 35317010
Alignment:
| Q |
253 |
tctctttcttcatacacattaggtactatctgaagcaaaacctcaacgtaggttgtgaaagttgaaacaaatagctcgttgattgcaacctattatgcta |
352 |
Q |
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| T |
35317242 |
tctctttcttcatacacattaggtactatctgaagcaaaacctcaacgtaggttgtgaaagttgaaacaaatagctcgttgattgcaacctattatgcta |
35317143 |
T |
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| Q |
353 |
ttggagcatcgaaaaaacacctctatctttctcacttgcataattccaaacactgagttgtgtctatcttatttatatctttgatacaccacttcaatct |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35317142 |
ttggagcatcgaaaaaacacctctatctttctcacttgcataattccaaacactgagttgtgtctatcttatttatatctttgatacaccacttcactct |
35317043 |
T |
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| Q |
453 |
gtcaccaatttgcttcactcaatttttcggttc |
485 |
Q |
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| T |
35317042 |
gtcaccaatttgcttcactcaatttttcggttc |
35317010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 35317501 - 35317263
Alignment:
| Q |
24 |
aaaacatcacaaaatttggtttccctcttaacccaaacctttacttcccacaaaccctatacccaatctgagaaagcacaatcttcctcacacgagaccg |
123 |
Q |
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| T |
35317501 |
aaaacatcacaaaatttggtttccctcttaacctaaacctttacttcccacaaaccctatacccaatctgagaaagcacaatcttcctcacacgagacag |
35317402 |
T |
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| Q |
124 |
caatccgctctccatcaccacctctcgccgccgccgctctctcttaatcaccacaattgaacggtgctttgttttccccaatcgatccggcgattctttc |
223 |
Q |
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| T |
35317401 |
caatccgctctccatcaccacctctcgccgccgccgctctctcttaatcaccacaattgaacggtgttttgtttaccccaatcgatccggcgattctctc |
35317302 |
T |
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| Q |
224 |
tccaggtgtcgatctttatatctttttactctctttctt |
262 |
Q |
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| T |
35317301 |
tccaggtgtcgatctttatatctttttactctctttctt |
35317263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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