View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_low_5 (Length: 484)
Name: NF4759_low_5
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 21 - 459
Target Start/End: Complemental strand, 48258974 - 48258540
Alignment:
| Q |
21 |
tagtatctaaaatagtaatgtctttactttaaaaaatcaggttgtacctcgcaaaccatatattatacatattggcgacgttgtgtatttaatggcctca |
120 |
Q |
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| T |
48258974 |
tagtatctaaaatagtaatgtctttactttaaaaaatcaggctgtacctcgcaaaccatatattatacat--tagcgacgttgtgtatttaatggcctca |
48258877 |
T |
|
| Q |
121 |
tcatccaaactgccaataatctgtctcagctagtgtatgaaatcacacataatgatatttaggaattgaataccaaaggtagatccaaaccaagccttca |
220 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48258876 |
tcattcaaactgccaataatctgtctcggctagtgtatgaaatcacacataatgatatttaggaattgaataccaaaggtagatccaaaccaagccttca |
48258777 |
T |
|
| Q |
221 |
taccaaaatcaccttccatgtaaagatagttcacaatttccactttattggcacatctagggcataaaacgtctccggccaagcctttatgatttaactc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48258776 |
taccaaaatcaccttccatgtaaagatagttcacaatttccactttattggcacatctagggcataaaacgtctccggccaagcctttatgatttaactc |
48258677 |
T |
|
| Q |
321 |
actcatgacatgcatagagtcgttaagaatgtgtcataggaaatctttgtgcttaggtatagtgtggagattccataatttcttccaaatctttttgtca |
420 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48258676 |
actcatgacatgcatagagtctttaagaatgtgtcatgggaaatctttgtgcttaggtatagtgtggagattccataatttcttccaaatctttttgtca |
48258577 |
T |
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| Q |
421 |
cctctatgatgccactcttcgatgctttatagccagttt |
459 |
Q |
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| T |
48258576 |
cctctatgatg--actcttcgatgctttatagccagttt |
48258540 |
T |
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