View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_low_6 (Length: 469)
Name: NF4759_low_6
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 23 - 455
Target Start/End: Complemental strand, 42823230 - 42822791
Alignment:
| Q |
23 |
tagactgcatagtctttgtcttttagttactgtctttactgatatatgctgtcattattaccatatacagaagaaagaaatcaaatcatcaatgatattg |
122 |
Q |
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| T |
42823230 |
tagactgcatagtctttgtcttttagttactgtctttactgatatatgctgtcattattaccatatacagaagaaagaaatcaaatcatcaatgatattg |
42823131 |
T |
|
| Q |
123 |
tatt------taatgagtttgttattagtggattaaatgctgttgtactattagggtcaatttttctatgagttggttgttgggg-cacagataaggcat |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42823130 |
tattgttatttaatgagtttgttattagtggattaaatgctgttgtactattagggtcaatttttctatgagttggttgttgggggcacagataaggcat |
42823031 |
T |
|
| Q |
216 |
aagtcctctttaccaatatctatctaatttgggccattcattttgtattgcatttaatttgggtgtccaagatattctcatattcaatgaatagcagatt |
315 |
Q |
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| T |
42823030 |
aagtcctctttaccaatatctatctaatttgggccattcattttgtattgcatttaatttgggtgtccaagatattctcatattcaatgaatatcagatt |
42822931 |
T |
|
| Q |
316 |
ttagttacgttactatttattatggtacatctttggagtgttttacactgcttcttttgaaagtgacaagaaatagatccaattttaatttgtagaaatt |
415 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42822930 |
ttagttacgttagtatttattatggtacatctttggagtgttttacactgcttcttttgaaagtgacaagaaatagatccaattttaatttgtagaaatt |
42822831 |
T |
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| Q |
416 |
tgttatgaagaggccaatttgaagaccttaattttcatct |
455 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
42822830 |
tgttatgaagaggccaatttgaagaccttaattttaatct |
42822791 |
T |
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