View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4759_low_7 (Length: 420)
Name: NF4759_low_7
Description: NF4759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4759_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 405
Target Start/End: Original strand, 46587831 - 46588217
Alignment:
| Q |
20 |
ctaccgaatatgtggagttacacgacgtgtgaatttagaggagcaaagttgcttggtagtgctgaacaaggtggtggtgaggggataaagattgagctga |
119 |
Q |
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| T |
46587831 |
ctaccgaatatgtggagttacacgacgtgtgaatttagaggagcaaagttgcttggtagtgctgatcaaggtggtggtgaggggataaagattgagctga |
46587930 |
T |
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| Q |
120 |
atcagttgaagccttattactttgcctctgatgaaggtaatgcctatgactgtattgctggactcaccaagttcattgctgttccatctacacgttcctt |
219 |
Q |
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| T |
46587931 |
atcaattgaagccttattactttgcctctgatgaaggcaatgcctatgactgtattgctggactcaccaagttcattgctgttccatctacacgttcctt |
46588030 |
T |
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| Q |
220 |
ttaatttagccctcatggcccaattgaatcaagttttttccttttaaggtagttgaattcaatatataaataaaatggatggtttcaatctgttttttct |
319 |
Q |
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| T |
46588031 |
ttaatttaaccctcatggcccaattgaatcaagttatttccttttaaggtagttgaattcaaaatataaataaaatggatggtttccatctgttttttct |
46588130 |
T |
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| Q |
320 |
ttcctgaagtatcgaaagnnnnnnnnttatgttttttattgtggtttgtg-tacctagaaagaaatgatgatgtatttttgtctctg |
405 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||| |||||||| | | | ||||||||||||||||||||| |
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| T |
46588131 |
ttcctggagtatcgaaagaaaaaaaattatgttttttattgtggtttgtgctacctagataaatacgatgatgtatttttgtctctg |
46588217 |
T |
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