View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4760-Insertion-1 (Length: 653)

Name: NF4760-Insertion-1
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4760-Insertion-1
NF4760-Insertion-1
[»] chr4 (8 HSPs)
chr4 (26-653)||(1480693-1481315)
chr4 (207-528)||(42327821-42328142)
chr4 (310-476)||(32499490-32499656)
chr4 (371-442)||(38761389-38761460)
chr4 (362-397)||(53985922-53985957)
chr4 (361-476)||(54421380-54421495)
chr4 (371-425)||(21257051-21257105)
chr4 (384-462)||(43733928-43734006)
[»] chr8 (8 HSPs)
chr8 (207-527)||(34752609-34752929)
chr8 (207-528)||(11629341-11629662)
chr8 (207-528)||(9180649-9180970)
chr8 (362-527)||(10394628-10394793)
chr8 (361-456)||(5896303-5896398)
chr8 (371-436)||(16484165-16484230)
chr8 (470-526)||(898766-898822)
chr8 (274-342)||(7593552-7593620)
[»] chr1 (7 HSPs)
chr1 (207-528)||(39500966-39501287)
chr1 (316-529)||(50182787-50182999)
chr1 (371-528)||(38599032-38599189)
chr1 (376-453)||(4048451-4048528)
chr1 (371-436)||(27643380-27643445)
chr1 (362-397)||(12458836-12458871)
chr1 (362-449)||(33978180-33978267)
[»] chr6 (1 HSPs)
chr6 (207-528)||(10158873-10159194)
[»] chr2 (4 HSPs)
chr2 (207-528)||(10747883-10748212)
chr2 (310-508)||(14785951-14786148)
chr2 (362-504)||(37670652-37670794)
chr2 (362-463)||(36756940-36757041)
[»] chr7 (7 HSPs)
chr7 (310-502)||(12350681-12350873)
chr7 (310-476)||(41147698-41147864)
chr7 (362-521)||(30305258-30305417)
chr7 (363-422)||(31802462-31802521)
chr7 (352-422)||(513838-513908)
chr7 (362-422)||(41605364-41605424)
chr7 (362-422)||(43970038-43970098)
[»] chr5 (6 HSPs)
chr5 (310-476)||(23151213-23151379)
chr5 (371-473)||(28499181-28499283)
chr5 (481-528)||(26600945-26600992)
chr5 (362-422)||(13020945-13021005)
chr5 (362-422)||(13092469-13092529)
chr5 (446-526)||(34893741-34893821)
[»] scaffold0067 (1 HSPs)
scaffold0067 (310-476)||(10955-11121)
[»] chr3 (5 HSPs)
chr3 (316-518)||(31574799-31575001)
chr3 (310-502)||(2497052-2497240)
chr3 (362-521)||(4741516-4741675)
chr3 (371-422)||(29210883-29210934)
chr3 (371-447)||(54548327-54548403)
[»] scaffold0007 (1 HSPs)
scaffold0007 (319-442)||(188385-188508)
[»] scaffold0996 (1 HSPs)
scaffold0996 (352-449)||(1546-1643)
[»] scaffold0024 (1 HSPs)
scaffold0024 (371-462)||(69039-69130)
[»] scaffold0687 (1 HSPs)
scaffold0687 (274-342)||(2900-2968)


Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 26 - 653
Target Start/End: Original strand, 1480693 - 1481315
Alignment:
Q  26 tcaggttacatataaaaatgccgcgattctaccgtctcaaccaagttttaccatatacaagattcaattatcaaattcttgtccaccaacttttttgaaa 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1480693 tcaggttacatataaaaatgccgcgattctaccgtctcaaccaagttttaccatatacaagattcaattatcaaattcttgtccaccaacttttttgaaa 1480792  T
Q  126 gcaattttgtcactcacaagttgcaaaaacaaagtgatttcataaaatttcacagtgctagtgctcctacaccgctggaattgctatcaaagtggctatc 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  1480793 gcaattttgtcactcacaagttgcaaaaacaaagtgatttcataaaatttcacagtgctagtgctcctacacggctggaatcgctatcaaagtgactatc 1480892  T
Q  226 tcatatggaatgtgtgacatcatgtttaagactgattcaaaaatcttatctgatgctcttgccaccaccactactgccatcaacgagttcggtgatcttg 325  Q
    ||| ||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1480893 tcacatggaa--tgtgacgtcatgtttaagactgattcaaaaatcttatctgatgctcttgccaccaccactactgccatcaacgagttcggtgatcttg 1480990  T
Q  326 taactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatc 425  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  1480991 taactcaatgtagaagtttactacttaatagacccaactttgtagtgtcgtatgataggaggcaagcaaatagagttactcatagtattgttagagcatc 1481090  T
Q  426 actatctcaccatagcccccatatctttcatcatg---taaggcctactttgtatccgttaatttttaataaaatgaattaactttgtctttgctaaaag 522  Q
    ||||||||     ||||||||||||||||||||||   ||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  1481091 actatctc-----agcccccatatctttcatcatgtaataaggccgactttctatctgttaatttttaatgaaatgaattaactttgtctttgctaaaag 1481185  T
Q  523 aaaaaagttaaatagttttgtatgaagtacaatggaagtagaaaatcaatataaagaatattagcaaatagttttgtacaatacataagtttatttttca 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |    
T  1481186 aaaaaagttaaatagttttgtatgaagtacaatggaagtagaaaatcaatataaagaatattagcaaatagttttgtacca-acataagtttatttttaa 1481284  T
Q  623 ctagaaaatcaataattcttatcatatctta 653  Q
    |||  ||||||||||||||||||||||||||    
T  1481285 ctactaaatcaataattcttatcatatctta 1481315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 207 - 528
Target Start/End: Complemental strand, 42328142 - 42327821
Alignment:
Q  207 tgctatcaaagtggctatctcatatggaatgtgtgacatcatgtttaagactgattcaaaaatcttatctgatgctcttgccaccaccactactgccatc 306  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||| || |||||| | |||||    
T  42328142 tgctatcaaagtggctatctcacatggaatgcgtgacatcatgtttgagaccgattcaaaaatcttatctgatgctattgccgccgccactattcccatc 42328043  T
Q  307 aacgagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactc 406  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||| ||||||  |||||||| ||||||||||||||||||||||||||| |||| |||    
T  42328042 aacgagttcggtgatcttgtaactcattgtagaaggttacttcttagtagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctc 42327943  T
Q  407 atagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaattaact 506  Q
    ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||    
T  42327942 ataatattgctagagcatcactatctcaccctagcccccatatctttcatcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaact 42327843  T
Q  507 ttgtctttgctaaaagaaaaaa 528  Q
    ||| |||||||| || ||||||    
T  42327842 ttgcctttgctacaaaaaaaaa 42327821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 310 - 476
Target Start/End: Original strand, 32499490 - 32499656
Alignment:
Q  310 gagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcata 409  Q
    ||||| || ||||||||||| |||||||||||| |  ||||| ||| |||  |||||| | |||||||||||||||||||||||||||  ||| ||||||    
T  32499490 gagtttggagatcttgtaacccaatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcata 32499589  T
Q  410 gtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgta 476  Q
    |||||| | |||| || |||||||| | |||||||||||| ||||||||||||  ||||||||||||    
T  32499590 gtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtattgcctactttgta 32499656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 38761460 - 38761389
Alignment:
Q  371 tgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcc 442  Q
    |||||| ||||| || |||||| ||||| ||| |||||||||||| |||||||||  ||||||||| |||||    
T  38761460 tgtcgtttgttaagaagcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagcc 38761389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 53985957 - 53985922
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaata 397  Q
    |||||||||||||||||||| |||||||||||||||    
T  53985957 actttgtattgtcgtatgttcggaggcaagcaaata 53985922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 476
Target Start/End: Complemental strand, 54421495 - 54421380
Alignment:
Q  361 aactttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatg 460  Q
    ||||||||| |||||| | || |||||||||| ||||| |||  ||||||||||| |||||| ||  |||| || | |||||||||||| ||  ||||||    
T  54421495 aactttgtagtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatg 54421396  T
Q  461 taaggcctactttgta 476  Q
    |||   ||||||||||    
T  54421395 taacaactactttgta 54421380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 21257051 - 21257105
Alignment:
Q  371 tgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatc 425  Q
    |||||| ||||| ||||||||| ||||| ||| |||||||||||| |||||||||    
T  21257051 tgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatc 21257105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 462
Target Start/End: Original strand, 43733928 - 43734006
Alignment:
Q  384 gaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgta 462  Q
    ||||||||||||||  ||  |||||||||||| ||||||  |  ||||||| | ||||||||||||||||||| |||||    
T  43733928 gaggcaagcaaatatggtagctcatagtattgctagagctgccttatctcatcctagcccccatatctttcatgatgta 43734006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 207 - 527
Target Start/End: Complemental strand, 34752929 - 34752609
Alignment:
Q  207 tgctatcaaagtggctatctcatatggaatgtgtgacatcatgtttaagactgattcaaaaatcttatctgatgctcttgccaccaccactactgccatc 306  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| | |||||    
T  34752929 tgctatcaaagtggctatctcacatggaatgtgtgacatcatgtttgagaccgattcaaaaatcttatctgatgctattgccaccaccactattcccatc 34752830  T
Q  307 aacgagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactc 406  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||  |||||||| ||||||||||||||||||||||||||| | || |||    
T  34752829 aacgagttcggtgatcttgtaactcaatgtagaaggttacttcttaatagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagaattgctc 34752730  T
Q  407 atagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaattaact 506  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  34752729 atagtattgctagagcatcactatctcaccctagcccccatatctttcatcatgtaacacctactttgtatccgttaatttttaatgaaatgaattaact 34752630  T
Q  507 ttgtctttgctaaaagaaaaa 527  Q
    ||| ||||||||||| |||||    
T  34752629 ttgcctttgctaaaaaaaaaa 34752609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 207 - 528
Target Start/End: Original strand, 11629341 - 11629662
Alignment:
Q  207 tgctatcaaagtggctatctcatatggaatgtgtgacatcatgtttaagactgattcaaaaatcttatctgatgctcttgccaccaccactactgccatc 306  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||| || ||||||||||||||| | |||||    
T  11629341 tgctatcaaagtggctatctcacatggaatgcgtgacatcatgtttgagaccgattcaaaaatcttatctgatactattgccaccaccactattcccatc 11629440  T
Q  307 aacgagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactc 406  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||  |||||||| ||||||||||||||||||||||||||| |||| |||    
T  11629441 aacgagttcggtgatcttgtaactcaatgtagaaggttacttcttaatagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctc 11629540  T
Q  407 atagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaattaact 506  Q
    ||||||||| |||||||||| ||||||||| ||| |||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||    
T  11629541 atagtattgctagagcatcattatctcaccctaggccccatatctttcatcatgtagcacctactttgtatccgttaatttttaatgaaatgaattaact 11629640  T
Q  507 ttgtctttgctaaaagaaaaaa 528  Q
    |||  |||||| ||| ||||||    
T  11629641 ttgcatttgctcaaaaaaaaaa 11629662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 207 - 528
Target Start/End: Complemental strand, 9180970 - 9180649
Alignment:
Q  207 tgctatcaaagtggctatctcatatggaatgtgtgacatcatgtttaagactgattcaaaaatcttatctgatgctcttgccaccaccactactgccatc 306  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||| || |||||| | |||||    
T  9180970 tgctatcaaagtggctatctcacatggaatgcgtgacatcatgtttgagaccgattcaaaaatcttatctgatgctattgccgccgccactattcccatc 9180871  T
Q  307 aacgagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactc 406  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||| ||||||  |||||||| ||||||||||||||||||||||||||| |||| |||    
T  9180870 aacgagttcggtgatcttgtaactcattgtagaaggttacttcttagtagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctc 9180771  T
Q  407 atagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaattaact 506  Q
    ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||    
T  9180770 ataatattgctagagcatcactatctcaccctagcccccatatctttcatcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaact 9180671  T
Q  507 ttgtctttgctaaaagaaaaaa 528  Q
    ||| ||||||| ||| ||||||    
T  9180670 ttgcctttgctcaaaaaaaaaa 9180649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 362 - 527
Target Start/End: Original strand, 10394628 - 10394793
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgt 461  Q
    ||||| || |||| ||| || |||||||| ||||||| |||||||||||||||| ||| |||||  ||||||| | || |||| |||| |||||| ||||    
T  10394628 actttataatgtcttatttttggaggcaaacaaataaggttactcatagtattgctagcgcatctttatctcatcctaacccctatatttttcatgatgt 10394727  T
Q  462 aaggcctactttgtatccgttaatttttaataaaatgaattaactttgtctttgctaaaagaaaaa 527  Q
    ||   || |||||||   ||||||||  ||| |||||||||| |||||  |||||||||| |||||    
T  10394728 aacaacttctttgtacatgttaatttggaatgaaatgaattagctttgcttttgctaaaaaaaaaa 10394793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 456
Target Start/End: Complemental strand, 5896398 - 5896303
Alignment:
Q  361 aactttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcat 456  Q
    |||| |||| |||||| |||||||||||||| ||||| |||  |||||||||||| ||||||  |  ||||||| | |||||||||||| ||||||    
T  5896398 aactatgtagtgtcgtttgttaggaggcaagaaaatatagtagctcatagtattgctagagctgccttatctcatcctagcccccatatttttcat 5896303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 16484230 - 16484165
Alignment:
Q  371 tgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcacc 436  Q
    |||||| ||||| ||||||||| ||||| ||| |||||||||||| |||||||||  |||||||||    
T  16484230 tgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctcacc 16484165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 898822 - 898766
Alignment:
Q  470 ctttgtatccgttaatttttaataaaatgaattaactttgtctttgctaaaagaaaa 526  Q
    ||||||||| | ||||||| ||| ||||||||||||||||  |||||||||| ||||    
T  898822 ctttgtatcggctaattttaaatgaaatgaattaactttgcttttgctaaaaaaaaa 898766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 7593620 - 7593552
Alignment:
Q  274 tctgatgctcttgccaccaccactactgccatcaacgagttcggtgatcttgtaactcaatgtagaagt 342  Q
    ||||||||| |  |||||||||||||| | ||||||||||| ||||||||| ||  | |||||||||||    
T  7593620 tctgatgctgtcaccaccaccactacttctatcaacgagtttggtgatcttttatttaaatgtagaagt 7593552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 207 - 528
Target Start/End: Original strand, 39500966 - 39501287
Alignment:
Q  207 tgctatcaaagtggctatctcatatggaatgtgtgacatcatgtttaagactgattcaaaaatcttatctgatgctcttgccaccaccactactgccatc 306  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||| | |||||    
T  39500966 tgctatcaaagtggctatctcacatggaatgcatgacatcatgtttaagatcgattcaaaaatcttatctgatgctattgccaccaccactatttccatc 39501065  T
Q  307 aacgagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactc 406  Q
    ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||  |||||||| ||||||||||||||||||||||||||| |||| ||     
T  39501066 aacaagttcggtgatcttgtaactcaatgtagaaggttacttcttaatagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctt 39501165  T
Q  407 atagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaattaact 506  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||| |    
T  39501166 atagtattgctagagcatcactatctcaccctagcctccatatctttcatcatgtaacacctactttgtatccgttagtttttaatgaaatgaattaatt 39501265  T
Q  507 ttgtctttgctaaaagaaaaaa 528  Q
     |||||||||||||| ||||||    
T  39501266 ctgtctttgctaaaaaaaaaaa 39501287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 316 - 529
Target Start/End: Original strand, 50182787 - 50182999
Alignment:
Q  316 ggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattg 415  Q
    |||||||||||||  ||||||| |||| |  ||||  |||||||  |||||||| || ||||| ||| |||||||||||||   ||| | ||||||||||    
T  50182787 ggtgatcttgtaatccaatgtaaaagtctcttactcgatagacccgactttgtagtgccgtatattaagaggcaagcaaatggtgttgcccatagtattg 50182886  T
Q  416 ttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaattaactttgtctttg 515  Q
     ||| |||||||||||| | | ||||||| |||| ||||||||||||| ||||||||||||| | |||||||| ||| ||||||| |||||||| |||||    
T  50182887 ctagggcatcactatctaatcctagcccc-atatttttcatcatgtaatgcctactttgtattccttaattttgaatgaaatgaagtaactttgcctttg 50182985  T
Q  516 ctaaaagaaaaaag 529  Q
    |||||| |||||||    
T  50182986 ctaaaaaaaaaaag 50182999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 371 - 528
Target Start/End: Original strand, 38599032 - 38599189
Alignment:
Q  371 tgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctac 470  Q
    |||| ||||||||||||||||  ||||||||| |||||||||||| |||||||||  || |  || ||||||||||||| |||  | |||||  | ||||    
T  38599032 tgtcatatgttaggaggcaagataataaagttgctcatagtattgctagagcatctttacccaactatagcccccatattttttgtgatgtaccgactac 38599131  T
Q  471 tttgtatccgttaatttttaataaaatgaattaactttgtctttgctaaaagaaaaaa 528  Q
    ||| || || |||||| | ||| |||||||||||||||   |||||||||| ||||||    
T  38599132 tttataccctttaattgtgaatgaaatgaattaactttacttttgctaaaaaaaaaaa 38599189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 453
Target Start/End: Complemental strand, 4048528 - 4048451
Alignment:
Q  376 tatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatcttt 453  Q
    ||||| |||||||||||||||||||||  ||| | ||| |||||||||||  ||||||| | ||||||||||||||||    
T  4048528 tatgtcaggaggcaagcaaataaagttgttcacactatagttagagcatctttatctcatcctagcccccatatcttt 4048451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 27643445 - 27643380
Alignment:
Q  371 tgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcacc 436  Q
    |||||| ||||| ||||||||| ||||| ||| |||||||||||| |||||||||  |||||||||    
T  27643445 tgtcgtttgttaagaggcaagctaataaggttgctcatagtattgctagagcatccttatctcacc 27643380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 12458871 - 12458836
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaata 397  Q
    |||||||||||||||||||| |||||||||||||||    
T  12458871 actttgtattgtcgtatgttcggaggcaagcaaata 12458836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 449
Target Start/End: Complemental strand, 33978267 - 33978180
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatat 449  Q
    |||||||| |||| |||||| |||||||||| ||||  ||| |||||||||||| |||||| ||  ||| ||| | ||||||||||||    
T  33978267 actttgtagtgtcatatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatat 33978180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 207 - 528
Target Start/End: Complemental strand, 10159194 - 10158873
Alignment:
Q  207 tgctatcaaagtggctatctcatatggaatgtgtgacatcatgtttaagactgattcaaaaatcttatctgatgctcttgccaccaccactactgccatc 306  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||| || |||||| | |||||    
T  10159194 tgctatcaaagtggctatctcacatggaatgcgtgacatcatgtttgagaccgattcaaaaatcttatctgatgctattgccgccgccactattcccatc 10159095  T
Q  307 aacgagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactc 406  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||| ||||||  |||||||| ||||||||||||||||||||||||||| |||| |||    
T  10159094 aacgagttcggtgatcttgtaactcattgtagaaggttacttcttagtagacccgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctc 10158995  T
Q  407 atagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaattaact 506  Q
    ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||    
T  10158994 ataatattgctagagcatcactatctcaccctagcccccatatctttcatcatgtaacacctactttgtatccgttaatttttaatgaaatgaactaact 10158895  T
Q  507 ttgtctttgctaaaagaaaaaa 528  Q
    ||| ||||||| ||| ||||||    
T  10158894 ttgcctttgctcaaaaaaaaaa 10158873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 207 - 528
Target Start/End: Original strand, 10747883 - 10748212
Alignment:
Q  207 tgctatcaaagtggctatctcatatggaatgtgtgac--------atcatgtttaagactgattcaaaaatcttatctgatgctcttgccaccaccacta 298  Q
    |||||||||||||||||||||| |||||||| |||||        ||||||||| |||| |||||||||||||||||||||||| ||||| || ||||||    
T  10747883 tgctatcaaagtggctatctcacatggaatgcgtgacatactgacatcatgtttgagaccgattcaaaaatcttatctgatgctattgccgccgccacta 10747982  T
Q  299 ctgccatcaacgagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataa 398  Q
     | ||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||  |||||||| |||||||||||||||||||||||||||     
T  10747983 ttcccatcaacgagttcggtgatcttgtaactcattgtagaaggttacttcttagtagacccgactttgtagtgtcgtatgttaggaggcaagcaaatag 10748082  T
Q  399 agttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatg 498  Q
    |||| |||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||  ||||||||||||||||||||||||||| |||||    
T  10748083 agttgctcataatattgctagagcatcactatctcaccctagccctcatatctttcatcatgtaacacctactttgtatccgttaatttttaatgaaatg 10748182  T
Q  499 aattaactttgtctttgctaaaagaaaaaa 528  Q
    || |||||||| ||||||| ||| ||||||    
T  10748183 aactaactttgcctttgctcaaaaaaaaaa 10748212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 310 - 508
Target Start/End: Original strand, 14785951 - 14786148
Alignment:
Q  310 gagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcata 409  Q
    ||||| |||||||||||||  |||||||||||| |  || || ||||||| || |||  | ||||||||||||||||||||||||||   ||| ||||||    
T  14785951 gagttaggtgatcttgtaatccaatgtagaagtcttttatttgatagacccaatttttcaatgtcgtatgttaggaggcaagcaaatggtgttgctcata 14786050  T
Q  410 gtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaattaacttt 508  Q
    |||||| |||||||||||||||||| | || ||||| ||| ||||||||| ||| || |||||||||| | |||||||| ||| ||||||| |||||||    
T  14786051 gtattgctagagcatcactatctcatcttaacccccttatttttcatcat-taatgcttactttgtattccttaattttgaatgaaatgaagtaacttt 14786148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 362 - 504
Target Start/End: Complemental strand, 37670794 - 37670652
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgt 461  Q
    |||||||  ||||||||||||| |||||| |||||||||||  ||||||||||| |||||||||  |||| |||| |||||||||||| ||| || ||||    
T  37670794 actttgttgtgtcgtatgttagaaggcaaacaaataaagttgttcatagtattgctagagcatctttatcccaccctagcccccatattttttatgatgt 37670695  T
Q  462 aaggcctactttgtatccgttaatttttaataaaatgaattaa 504  Q
    |  | |||||||||| || |||||| |  || |||||||||||    
T  37670694 accgactactttgtaccctttaattatggatgaaatgaattaa 37670652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 463
Target Start/End: Complemental strand, 36757041 - 36756940
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgt 461  Q
    |||||||| |||||| | || |||||||||| ||||||||| |||||||||||| |||||| ||  |||| || | |||||||||||| ||  |||||||    
T  36757041 actttgtagtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatgt 36756942  T
Q  462 aa 463  Q
    ||    
T  36756941 aa 36756940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 310 - 502
Target Start/End: Complemental strand, 12350873 - 12350681
Alignment:
Q  310 gagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcata 409  Q
    ||||| || ||||||||||| |||||||||||| || ||||| ||| |||  |||||| | |||||||||||||||||||||||||||  ||| ||||||    
T  12350873 gagtttggagatcttgtaacccaatgtagaagtctattacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatattgttgctcata 12350774  T
Q  410 gtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaatt 502  Q
    |||||| | |||| || |||||||| | || ||||||||| ||||||||||||  |||||||||||| |  |||||||| ||| |||||||||    
T  12350773 gtattgctcgagcttcgctatctcatcctatcccccatatttttcatcatgtattgcctactttgtaccatttaattttgaatgaaatgaatt 12350681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 310 - 476
Target Start/End: Original strand, 41147698 - 41147864
Alignment:
Q  310 gagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcata 409  Q
    ||||| || ||||||||||| |||||||||||| |  ||||| ||| |||  |||||| | |||||||||||||||||||||||||||  ||| ||||||    
T  41147698 gagtttggagatcttgtaacccaatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcata 41147797  T
Q  410 gtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgta 476  Q
    |||||| | |||| || |||||||| | |||||||||||| ||||||||||||  ||||||||||||    
T  41147798 gtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtattgcctactttgta 41147864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 362 - 521
Target Start/End: Complemental strand, 30305417 - 30305258
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgt 461  Q
    ||||||||  |||||||||| |||||||| |||||| | || |||||||||||| || | ||||||||||||||| ||| |||||||| |||| ||||||    
T  30305417 actttgtagagtcgtatgtttggaggcaaacaaatagaattgctcatagtattgctaaaacatcactatctcaccctagaccccatatttttcgtcatgt 30305318  T
Q  462 aaggcctactttgtatccgttaatttttaataaaatgaattaactttgtctttgctaaaa 521  Q
    |  | |||||||||||||||| |||||  || ||| ||| |||||| | |||||||||||    
T  30305317 atcgtctactttgtatccgttgattttgtatgaaaggaactaacttcgcctttgctaaaa 30305258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 31802462 - 31802521
Alignment:
Q  363 ctttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagc 422  Q
    ||||||| ||||||||||| |||||||||| ||||| ||| |||||||||||| ||||||    
T  31802462 ctttgtagtgtcgtatgttcggaggcaagctaataaggttgctcatagtattgctagagc 31802521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 513838 - 513908
Alignment:
Q  352 aatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagc 422  Q
    ||||||||  |||||||| ||||||||||| |||||||||| ||||  ||| |||||||||||| ||||||    
T  513838 aatagacccgactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagc 513908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 41605364 - 41605424
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagc 422  Q
    |||||||| |||||||||||  |||| | |||||||| ||| |||||||||||| ||||||    
T  41605364 actttgtagtgtcgtatgtttagaggtaggcaaataaggttgctcatagtattgctagagc 41605424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 43970038 - 43970098
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagc 422  Q
    ||||| || |||| |||||| | |||||||||||||| ||| |||||||||||| ||||||    
T  43970038 actttatagtgtcatatgttcgtaggcaagcaaataaggttgctcatagtattgctagagc 43970098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 310 - 476
Target Start/End: Original strand, 23151213 - 23151379
Alignment:
Q  310 gagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcata 409  Q
    ||||| || ||||||||||| |||||||||||| |  ||||| ||| |||  |||||| | |||||||||||||||||||||||||||  ||| ||||||    
T  23151213 gagtttggagatcttgtaacccaatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcata 23151312  T
Q  410 gtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgta 476  Q
    |||||| | |||| || |||||||| | |||||||||||| ||||||||||||  ||||||||||||    
T  23151313 gtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtattgcctactttgta 23151379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 371 - 473
Target Start/End: Original strand, 28499181 - 28499283
Alignment:
Q  371 tgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctac 470  Q
    |||||||||||||||||||||||||||  ||| |||||||||||| | |||| || |||||||| | |||||||||||| ||||||||||||  ||||||    
T  28499181 tgtcgtatgttaggaggcaagcaaatagtgttgctcatagtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtattgcctac 28499280  T
Q  471 ttt 473  Q
    |||    
T  28499281 ttt 28499283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 528
Target Start/End: Complemental strand, 26600992 - 26600945
Alignment:
Q  481 ttaatttttaataaaatgaattaactttgtctttgctaaaagaaaaaa 528  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  26600992 ttaatttttaatgaaatgaattaactttgtctttgctaaaaaaaaaaa 26600945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 13021005 - 13020945
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagc 422  Q
    |||||||| ||||||||||| |||||||||||||||| ||| || ||||||||| ||||||    
T  13021005 actttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagc 13020945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 13092529 - 13092469
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagc 422  Q
    |||||||| ||||||||||| |||||||||||||||| ||| || ||||||||| ||||||    
T  13092529 actttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagc 13092469  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 526
Target Start/End: Complemental strand, 34893821 - 34893741
Alignment:
Q  446 atatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaattaactttgtctttgctaaaagaaaa 526  Q
    |||| ||||||||||||  |||||||||||| |  |||||||| ||| ||||||||| ||| || ||||||| ||| ||||    
T  34893821 atatttttcatcatgtattgcctactttgtaccaattaattttgaatgaaatgaattgactctgcctttgctcaaaaaaaa 34893741  T

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Target: scaffold0067 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 310 - 476
Target Start/End: Complemental strand, 11121 - 10955
Alignment:
Q  310 gagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcata 409  Q
    ||||| || ||||||||||| |||||||||||| |  ||||| ||| |||  |||||| | |||||||||||||||||||||||||||  ||| ||| ||    
T  11121 gagtttggagatcttgtaacccaatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgttaggaggcaagcaaatagtgttgctcgta 11022  T
Q  410 gtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgta 476  Q
    |||||| | |||| || |||||||| | |||||||||||| ||||||||||||  ||||||||||||    
T  11021 gtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtattgcctactttgta 10955  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 316 - 518
Target Start/End: Original strand, 31574799 - 31575001
Alignment:
Q  316 ggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattg 415  Q
    |||||| ||||||  |||||||||||| |  ||||  ||||| |  |||||| | |||||||| |||||||||||| ||||   ||| ||| ||||||||    
T  31574799 ggtgattttgtaatccaatgtagaagtctcttactcgatagatccgactttgcagtgtcgtatattaggaggcaagtaaatggtgttgctcgtagtattg 31574898  T
Q  416 ttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaattaactttgtctttg 515  Q
     ||| |||||||||||| | | ||||| |||||| ||||||||||||| |||||||| |||| | |||||||| ||| ||||||| ||||||||  ||||    
T  31574899 ctagggcatcactatctaatcctagccgccatatttttcatcatgtaatgcctacttagtattccttaattttgaatgaaatgaagtaactttgcttttg 31574998  T
Q  516 cta 518  Q
    |||    
T  31574999 cta 31575001  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 310 - 502
Target Start/End: Complemental strand, 2497240 - 2497052
Alignment:
Q  310 gagttcggtgatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcata 409  Q
    ||||| || ||||||||||| |||||||||||| |  ||||| ||| |||  |||||| | |||||||||||    ||||||||||||  ||| ||||||    
T  2497240 gagtttggagatcttgtaacccaatgtagaagtctcttacttgataaacccgactttgcagtgtcgtatgtt----ggcaagcaaatagtgttgctcata 2497145  T
Q  410 gtattgttagagcatcactatctcaccatagcccccatatctttcatcatgtaaggcctactttgtatccgttaatttttaataaaatgaatt 502  Q
    |||||| | |||| || |||||||| | |||||||||||| ||||||||||||  |||||||||||| |  |||||| | ||| |||||||||    
T  2497144 gtattgctcgagcttcgctatctcatcctagcccccatatttttcatcatgtattgcctactttgtaccgcttaattatgaatgaaatgaatt 2497052  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 362 - 521
Target Start/End: Complemental strand, 4741675 - 4741516
Alignment:
Q  362 actttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgt 461  Q
    |||||||  ||||||||||||||||||| || ||||||||| |||||||||||| |||||||||  ||||  ||| |||||||||||| |||  | ||||    
T  4741675 actttgttgtgtcgtatgttaggaggcacgctaataaagttgctcatagtattgctagagcatctttatccaaccctagcccccatattttttgtgatgt 4741576  T
Q  462 aaggcctactttgtatccgttaatttttaataaaatgaattaactttgtctttgctaaaa 521  Q
    |  | ||||||| ||    |||||| | ||| ||||||||||||||||| ||||||||||    
T  4741575 accgactactttatactttttaattatgaatgaaatgaattaactttgtttttgctaaaa 4741516  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 29210934 - 29210883
Alignment:
Q  371 tgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagc 422  Q
    |||||| |||| ||||||||||||||||||| |||||||| |||| ||||||    
T  29210934 tgtcgtttgttcggaggcaagcaaataaagtaactcatagcattgctagagc 29210883  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 371 - 447
Target Start/End: Complemental strand, 54548403 - 54548327
Alignment:
Q  371 tgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccat 447  Q
    |||||||| ||||||||||||  |||| |||| |||||||||| | |||||| ||  ||||||| | ||||||||||    
T  54548403 tgtcgtatattaggaggcaagttaatagagttgctcatagtatagctagagcttccttatctcatcctagcccccat 54548327  T

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Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 319 - 442
Target Start/End: Complemental strand, 188508 - 188385
Alignment:
Q  319 gatcttgtaactcaatgtagaagtttactacttaatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgtta 418  Q
    |||||||||  | ||||||||||| |  |||||| ||||||  |||||||| | |||||| ||||||| |||| ||||| |||| |||||| ||||| ||    
T  188508 gatcttgtatgttaatgtagaagtctcttacttattagacccgactttgtagtatcgtatattaggagacaagtaaatagagttgctcataatattgcta 188409  T
Q  419 gagcatcactatctcaccatagcc 442  Q
    |||| ||||||| ||||| |||||    
T  188408 gagcctcactatttcaccctagcc 188385  T

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Target: scaffold0996 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 449
Target Start/End: Complemental strand, 1643 - 1546
Alignment:
Q  352 aatagaccgaactttgtattgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatat 449  Q
    ||||||||  |||||||| ||||||||||| |||||||||| ||||  ||| |||||||||||| |||||| ||  ||| ||| | ||||||||||||    
T  1643 aatagacccgactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatat 1546  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 371 - 462
Target Start/End: Complemental strand, 69130 - 69039
Alignment:
Q  371 tgtcgtatgttaggaggcaagcaaataaagttactcatagtattgttagagcatcactatctcaccatagcccccatatctttcatcatgta 462  Q
    |||||| ||||||||| ||||||||||||||| |||||||||| | |||||| ||  |||  |||||||||| |||||| ||| || |||||    
T  69130 tgtcgtgtgttaggagacaagcaaataaagttgctcatagtatcgctagagcgtctttattccaccatagcctccatattttttatgatgta 69039  T

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Target: scaffold0687 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 2968 - 2900
Alignment:
Q  274 tctgatgctcttgccaccaccactactgccatcaacgagttcggtgatcttgtaactcaatgtagaagt 342  Q
    ||||||||| |  |||||||||||||| | ||||||||||| ||||||||| ||  | |||||||||||    
T  2968 tctgatgctgtcaccaccaccactacttctatcaacgagtttggtgatcttttatttaaatgtagaagt 2900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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