View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4760-Insertion-10 (Length: 240)

Name: NF4760-Insertion-10
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4760-Insertion-10
NF4760-Insertion-10
[»] chr7 (4 HSPs)
chr7 (8-217)||(35562654-35562856)
chr7 (73-108)||(15017130-15017165)
chr7 (73-119)||(37890181-37890227)
chr7 (75-128)||(35362801-35362854)
[»] chr8 (2 HSPs)
chr8 (73-119)||(18196837-18196883)
chr8 (73-133)||(8054499-8054559)
[»] chr3 (3 HSPs)
chr3 (72-119)||(30293176-30293223)
chr3 (73-108)||(3961467-3961502)
chr3 (73-134)||(51742166-51742227)
[»] scaffold0039 (1 HSPs)
scaffold0039 (73-119)||(69165-69211)
[»] chr5 (3 HSPs)
chr5 (73-133)||(20145910-20145970)
chr5 (73-106)||(42396187-42396220)
chr5 (75-119)||(23233024-23233068)
[»] chr1 (2 HSPs)
chr1 (72-108)||(30678648-30678684)
chr1 (73-128)||(18343986-18344041)
[»] scaffold0432 (1 HSPs)
scaffold0432 (73-116)||(2125-2168)
[»] chr6 (4 HSPs)
chr6 (70-101)||(15399766-15399797)
chr6 (70-101)||(15411553-15411584)
chr6 (73-128)||(20845381-20845436)
chr6 (73-133)||(13233799-13233859)
[»] chr4 (2 HSPs)
chr4 (73-128)||(25658550-25658605)
chr4 (87-115)||(40129898-40129926)
[»] chr2 (3 HSPs)
chr2 (87-118)||(45041235-45041266)
chr2 (73-115)||(25237022-25237064)
chr2 (73-133)||(31125070-31125130)


Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 35562856 - 35562654
Alignment:
Q  8 ttataaataggaaaattatctggtacctagagcttcnnnnnnnnactaaaaatataccatatttatcaaattgataaaatatatcgatacaatacaaatt 107  Q
    |||||||||||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  35562856 ttataaataggaaaattatctggtacctagagttttttttttttactaaaaatataccatatttatcaaattgacaaagtatatcgatacaatacaaatt 35562757  T
Q  108 cgttaaaaacaagaagaatgagtatgcnnnnnnnnnnnnnnnnctcacacaatctatgttaatagcataacatggtaaaatacacaaggctacaagtatg 207  Q
    |||||||||||||||||||||||||||                || |||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35562756 cgttaaaaacaagaagaatgagtatgc-------aaaaaaaaactaacaccatctatgttaatagcataacatggtaaaatacacaaggctacaagcatg 35562664  T
Q  208 acaatattca 217  Q
    ||||||||||    
T  35562663 acaatattca 35562654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 15017130 - 15017165
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattc 108  Q
    |||||||||||||||| |||||||||||||||||||    
T  15017130 tcaaattgataaaatacatcgatacaatacaaattc 15017165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 37890181 - 37890227
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaa 119  Q
    ||||||||||| | || ||||||||||| ||||||||||||||||||    
T  37890181 tcaaattgatatagtacatcgatacaatgcaaattcgttaaaaacaa 37890227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 35362801 - 35362854
Alignment:
Q  75 aaattgataaaatatatcgatacaatacaaattcgttaaaaacaagaagaatga 128  Q
    ||||||||| | |||||||||||||| |||||||| ||||||||| ||| ||||    
T  35362801 aaattgatagagtatatcgatacaatgcaaattcgctaaaaacaaaaaggatga 35362854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 18196837 - 18196883
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaa 119  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||    
T  18196837 tcaaattgatagagtatatcgatacaatacaaattcgttaaaaacaa 18196883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 8054499 - 8054559
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaagaagaatgagtatg 133  Q
    ||||||||||| |||| ||||||| |||||||||||| ||||||||| ||| |||| ||||    
T  8054499 tcaaattgatagaatacatcgatataatacaaattcgctaaaaacaaaaaggatgaatatg 8054559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 30293223 - 30293176
Alignment:
Q  72 atcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaa 119  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  30293223 atcaaattgatagaatatattgatacaatacaaattcgctaaaaacaa 30293176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 3961467 - 3961502
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattc 108  Q
    ||||||||||||| ||||||||||||||||||||||    
T  3961467 tcaaattgataaagtatatcgatacaatacaaattc 3961502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 51742227 - 51742166
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaagaagaatgagtatgc 134  Q
    ||||||||||| | ||||| |||||||||||||||||  ||||| || |||||||| |||||    
T  51742227 tcaaattgatagagtatattgatacaatacaaattcgccaaaaaaaaaaagaatgaatatgc 51742166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 69211 - 69165
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaa 119  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  69211 tcaaatttataaaatatatcgatacaatataaattcgctaaaaacaa 69165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 20145910 - 20145970
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaagaagaatgagtatg 133  Q
    ||||||||||| | | ||||||| ||||||||||||| ||||||||| |||||||| ||||    
T  20145910 tcaaattgatagagtgtatcgatgcaatacaaattcgctaaaaacaataagaatgaatatg 20145970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 42396187 - 42396220
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaat 106  Q
    ||||||||||| ||||||||||||||||||||||    
T  42396187 tcaaattgatagaatatatcgatacaatacaaat 42396220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 23233068 - 23233024
Alignment:
Q  75 aaattgataaaatatatcgatacaatacaaattcgttaaaaacaa 119  Q
    ||||||||||||||||||||||||||| ||| ||  |||||||||    
T  23233068 aaattgataaaatatatcgatacaatataaactctctaaaaacaa 23233024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 30678684 - 30678648
Alignment:
Q  72 atcaaattgataaaatatatcgatacaatacaaattc 108  Q
    |||||||||||| ||||||||||||||||||||||||    
T  30678684 atcaaattgatagaatatatcgatacaatacaaattc 30678648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 18344041 - 18343986
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaagaagaatga 128  Q
    ||||||||||| | ||||||||||||||||||||| | ||||||||| ||| ||||    
T  18344041 tcaaattgatagagtatatcgatacaatacaaatttgctaaaaacaaaaaggatga 18343986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 2125 - 2168
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaa 116  Q
    ||||||||||||| || |||||||||||||||||||| ||||||    
T  2125 tcaaattgataaagtacatcgatacaatacaaattcgctaaaaa 2168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 101
Target Start/End: Complemental strand, 15399797 - 15399766
Alignment:
Q  70 ttatcaaattgataaaatatatcgatacaata 101  Q
    ||||||||||||||||||||||||||||||||    
T  15399797 ttatcaaattgataaaatatatcgatacaata 15399766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 101
Target Start/End: Complemental strand, 15411584 - 15411553
Alignment:
Q  70 ttatcaaattgataaaatatatcgatacaata 101  Q
    ||||||||||||||||||||||||||||||||    
T  15411584 ttatcaaattgataaaatatatcgatacaata 15411553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 20845436 - 20845381
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaagaagaatga 128  Q
    ||||||||||| | || ||||||| |||||||||||| ||||||||| ||||||||    
T  20845436 tcaaattgatatagtacatcgatataatacaaattcgctaaaaacaaaaagaatga 20845381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 13233799 - 13233859
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaagaagaatgagtatg 133  Q
    ||||||||||| | |||||| ||| |||||||||||| ||||||||| ||| |||| ||||    
T  13233799 tcaaattgatagagtatatcaatataatacaaattcgctaaaaacaaaaaggatgaatatg 13233859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 25658605 - 25658550
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaagaagaatga 128  Q
    ||||||||| |||||| || ||||||||||||||||| ||||||||| || |||||    
T  25658605 tcaaattgacaaaatacattgatacaatacaaattcgctaaaaacaaaaataatga 25658550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 40129926 - 40129898
Alignment:
Q  87 tatatcgatacaatacaaattcgttaaaa 115  Q
    |||||||||||||||||||||||||||||    
T  40129926 tatatcgatacaatacaaattcgttaaaa 40129898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 118
Target Start/End: Complemental strand, 45041266 - 45041235
Alignment:
Q  87 tatatcgatacaatacaaattcgttaaaaaca 118  Q
    ||||||||||||||||||||||||||||||||    
T  45041266 tatatcgatacaatacaaattcgttaaaaaca 45041235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 25237022 - 25237064
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaa 115  Q
    ||||||||||| | |||||||||||||| ||||||||||||||    
T  25237022 tcaaattgatagagtatatcgatacaatgcaaattcgttaaaa 25237064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 31125070 - 31125130
Alignment:
Q  73 tcaaattgataaaatatatcgatacaatacaaattcgttaaaaacaagaagaatgagtatg 133  Q
    ||||||||||||| || || ||| ||||||||||||| ||||||||| ||| |||| ||||    
T  31125070 tcaaattgataaagtacattgatgcaatacaaattcgctaaaaacaaaaaggatgaatatg 31125130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University