View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4760-Insertion-3 (Length: 574)

Name: NF4760-Insertion-3
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4760-Insertion-3
NF4760-Insertion-3
[»] chr4 (10 HSPs)
chr4 (37-571)||(4623979-4624512)
chr4 (255-571)||(4599651-4599961)
chr4 (47-254)||(4600048-4600254)
chr4 (452-570)||(25038173-25038291)
chr4 (452-570)||(25017068-25017186)
chr4 (63-149)||(25017633-25017719)
chr4 (100-154)||(25189342-25189396)
chr4 (64-168)||(25038721-25038825)
chr4 (100-154)||(25000794-25000848)
chr4 (67-153)||(25046719-25046805)
[»] chr2 (4 HSPs)
chr2 (431-574)||(18804691-18804831)
chr2 (50-154)||(18804062-18804166)
chr2 (94-152)||(7890612-7890670)
chr2 (94-152)||(7897574-7897632)


Alignment Details
Target: chr4 (Bit Score: 495; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 37 - 571
Target Start/End: Complemental strand, 4624512 - 4623979
Alignment:
Q  37 attcccatagttgattgtttaatttctatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagagtgaagcattggg 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  4624512 attcccatagttgattgtttaatttctatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagtgtaaagcattggg 4624413  T
Q  137 ttacttttaatgaaccattctcttacactttgagtacatcagattggtacaagtccacacacaaccaacttcttgctcatgcagatgttgtcgaattgta 236  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4624412 ttacttttaatgagccattctcttacactttgagtacatcagattggtacaagtccacacacaaccaacttcttgctcatgcagatgttttcgaattgta 4624313  T
Q  237 tcaaaaccacatatcaggctcaaaatggtgcaataggcattggattaaactctcactggtttaaaccatactcaactgacccattagatcaaaaagccgc 336  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4624312 t-aaaaccacatatcaggctcaaaatggtgtaataggcattggattaaactctcactggtttaaaccatactcaactgacccattagatcaaaaagccgc 4624214  T
Q  337 tgaagacgcccttgatttcatgtttggatggtaacaactatactttttgaccgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataattt 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4624213 tgaagacgcccttgatttcatgtttggatggtaacaactatactttttgaccgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataattt 4624114  T
Q  437 gaaatcttctttatctgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagttaccaaagttc 536  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4624113 aaaatcttctttatctgtttgcaggtttatacagccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagctaccaaagttc 4624014  T
Q  537 actgcagagcaatctaagagtcttattgggtcata 571  Q
    |||||||||||||||||||||||||||||||||||    
T  4624013 actgcagagcaatctaagagtcttattgggtcata 4623979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 255 - 571
Target Start/End: Complemental strand, 4599961 - 4599651
Alignment:
Q  255 ctcaaaatggtgcaataggcattggattaaactctcactggtttaaaccatactcaactgacccattagatcaaaaagccgctgaagacgcccttgattt 354  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| | |||  ||||||||||||    
T  4599961 ctcaaaacggtgtaataggcattggattaaactctcactggtttaaaccgtactcaacagacccattagatcaacaagccaccgaacgcgcccttgattt 4599862  T
Q  355 catgtttggatggtaacaactatactttttgaccgtttctacaacaaccatggatcgcgacaaaattgtgaccgtataatttgaaatcttctttatctgt 454  Q
    ||||||||||||||||  ||||   ||||| ||| ||||||| ||||||||||||| ||||||||||||||| |  |||||| |||||||||||||||||    
T  4599861 catgtttggatggtaatgacta-ctttttttaccttttctacgacaaccatggatcacgacaaaattgtgacgg--taatttaaaatcttctttatctgt 4599765  T
Q  455 ttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagttaccaaagttcactgcagagcaatctaag 554  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| | |||||||||  |||  ||||   |||||||||||||||| ||||||||||||     
T  4599764 ttgcaggtttatacagccactgacaaccggagagtatccagcaaacatggtgtctttcgtgaaagat---ttaccaaagttcactgaagagcaatctaaa 4599668  T
Q  555 agtcttattgggtcata 571  Q
    |||||||||||||||||    
T  4599667 agtcttattgggtcata 4599651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 47 - 254
Target Start/End: Complemental strand, 4600254 - 4600048
Alignment:
Q  47 ttgattgtttaatttctatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagagtgaagcattgggttacttttaa 146  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||| | ||||||||||| ||||| ||||||||||||||||||||    
T  4600254 ttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaa 4600155  T
Q  147 tgaaccattctcttacactttgagtacatcagattggtacaagtccacacacaaccaacttcttgctcatgcagatgttgtcgaattgtatcaaaaccac 246  Q
    ||| |||||||||||   ||||||||||||| || | |||||  |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||     
T  4600154 tgagccattctcttattgtttgagtacatcacatcgttacaaagccacacacaaccaacttctttctcatgcagctgttgtcgaattgtat-aaaaccaa 4600056  T
Q  247 atatcagg 254  Q
    ||||||||    
T  4600055 atatcagg 4600048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 452 - 570
Target Start/End: Complemental strand, 25038291 - 25038173
Alignment:
Q  452 tgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagttaccaaagttcactgcagagcaatct 551  Q
    |||||| |||||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||| ||   ||||||||||||||   ||||||||||    
T  25038291 tgtttgtaggtttatgcagccactgacaacaggagagtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccagagagcaatct 25038192  T
Q  552 aagagtcttattgggtcat 570  Q
    |||| ||||||||| ||||    
T  25038191 aagattcttattggctcat 25038173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 452 - 570
Target Start/End: Complemental strand, 25017186 - 25017068
Alignment:
Q  452 tgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagttaccaaagttcactgcagagcaatct 551  Q
    ||||||||||||||| || ||| |||| |||||||||||||||  |||| ||||||||| || |||| ||   ||||||||||||||   ||||||||||    
T  25017186 tgtttgcaggtttatgcagccattgaccacaggagagtatccattaagcatggtgtcttttgcgggaaatcgtttaccaaagttcaccaaagagcaatct 25017087  T
Q  552 aagagtcttattgggtcat 570  Q
    ||||  |||||||| ||||    
T  25017086 aagatgcttattggctcat 25017068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 25017719 - 25017633
Alignment:
Q  63 tatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagagtgaagcattgggttacttttaatga 149  Q
    |||||||||||| |||||| |||||| ||  ||  ||||||||||||||||||||||| |||||||||||||| |||| || |||||    
T  25017719 tatatgcagaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattaccttcaatga 25017633  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 25189396 - 25189342
Alignment:
Q  100 tgcttcaaggaatttggagacagagtgaagcattgggttacttttaatgaaccat 154  Q
    |||||||||||||||||||| ||||||||| | |||||||||||||| |||||||    
T  25189396 tgcttcaaggaatttggagatagagtgaagtactgggttacttttaacgaaccat 25189342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 25038825 - 25038721
Alignment:
Q  64 atatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagagtgaagcattgggttacttttaatgaaccattctcttaca 163  Q
    ||||||||||| |||||| | |||| ||  ||  |||||||||||||||| ||||| ||||||||||||||| |||| || ||||| |||  ||||||||    
T  25038825 atatgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagccacactcttaca 25038726  T
Q  164 ctttg 168  Q
     ||||    
T  25038725 gtttg 25038721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 25000794 - 25000848
Alignment:
Q  100 tgcttcaaggaatttggagacagagtgaagcattgggttacttttaatgaaccat 154  Q
    ||||||||||||||||| || || ||||| |||||| ||||||| ||||||||||    
T  25000794 tgcttcaaggaatttggcgatagggtgaaacattggattactttgaatgaaccat 25000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 25046805 - 25046719
Alignment:
Q  67 tgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagagtgaagcattgggttacttttaatgaacca 153  Q
    |||||||| ||||||||||||| ||  ||| | ||||||||||||||||| || || ||||| | ||||  |||||| |||||||||    
T  25046805 tgcagaaatgattttaaggactatgctgatctttgcttcaaggaatttggtgatagggtgaaacgttggactactttgaatgaacca 25046719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 431 - 574
Target Start/End: Original strand, 18804691 - 18804831
Alignment:
Q  431 taatttgaaatcttctttatctgtttgcaggtttatacaaccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagttacca 530  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| || ||   || |  ||||||    
T  18804691 taatttaaaatcttctttatctgtttgcaggtttttacaaccactgacaacaggagagtacccagcaagcatggtgtctaatttg---gaaacattacca 18804787  T
Q  531 aagttcactgcagagcaatctaagagtcttattgggtcatacga 574  Q
    |||||||||  |||||||| | ||||||||||||||||||||||    
T  18804788 aagttcactaaagagcaatatgagagtcttattgggtcatacga 18804831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 18804062 - 18804166
Alignment:
Q  50 attgtttaatttctatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagagtgaagcattgggttacttttaatga 149  Q
    ||||||||||||||| ||||||| | ||||| |||  |||||||||  |||||||| ||||||||||||||||||| || |||||| ||||| |||||||    
T  18804062 attgtttaatttctacatgcagagatgatttcaagagctttgtggaggtatgcttcgaggaatttggagacagagtaaatcattggattactcttaatga 18804161  T
Q  150 accat 154  Q
     ||||    
T  18804162 gccat 18804166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 7890612 - 7890670
Alignment:
Q  94 gatatatgcttcaaggaatttggagacagagtgaagcattgggttacttttaatgaacc 152  Q
    ||||||||||||||  | |||||||||||||||||  ||||||| || |||||||||||    
T  7890612 gatatatgcttcaaatactttggagacagagtgaaatattgggtgacatttaatgaacc 7890670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 7897574 - 7897632
Alignment:
Q  94 gatatatgcttcaaggaatttggagacagagtgaagcattgggttacttttaatgaacc 152  Q
    ||||||||||||||  | |||||||||||||||||  ||||||| || |||||||||||    
T  7897574 gatatatgcttcaaatactttggagacagagtgaaatattgggtgacatttaatgaacc 7897632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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