View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4760-Insertion-4 (Length: 346)
Name: NF4760-Insertion-4
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4760-Insertion-4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 2497104 - 2496765
Alignment:
| Q |
7 |
atttaaaccatatacaaacatcgtttctaacctaagtggagagctccttttggcaatgtttatcttaatggcaacgttagtcacaattccaagtcaaatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2497104 |
atttaaaccatatacaaacatcgtttctaacctaagtggagagctccttttggcaatgtttatcttaatggcaacgttagtcacaattccaagtcaaatt |
2497005 |
T |
|
| Q |
107 |
tttagtctattacaatatttatgcattatctagctaggatgaatgattaatttattttcccacgctgagatgacgtatgcgtaagattttatttgaaata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2497004 |
tttagtctattacaatatttatgcattatctagctaggatgaatgattaatttattttcccacgctgagatgacgtatgcgtaagattttatttgaaata |
2496905 |
T |
|
| Q |
207 |
tnnnnnnntgatttgatctatatatttaatctgcagataacccgtgttgttttcagtttgttttaattattgattcacgccacaaatttctacatagatt |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2496904 |
taaaaaaatgatttgatctatatatttaatctgcagataacccgtgttgttttcagtttgttttaattattgattcacgccacaaatttctacatagatt |
2496805 |
T |
|
| Q |
307 |
gttcaagtaagccagatatattggtgcatcatatatcttc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2496804 |
gttcaagtaagccagatatattggtgcatcatatatcttc |
2496765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University