View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4760-Insertion-6 (Length: 156)

Name: NF4760-Insertion-6
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4760-Insertion-6
NF4760-Insertion-6
[»] chr2 (13 HSPs)
chr2 (7-111)||(30051134-30051238)
chr2 (7-111)||(30142178-30142282)
chr2 (7-111)||(30045789-30045893)
chr2 (7-111)||(30050952-30051056)
chr2 (7-111)||(30141996-30142100)
chr2 (7-111)||(30045606-30045710)
chr2 (7-111)||(30050769-30050873)
chr2 (7-111)||(30141813-30141917)
chr2 (7-111)||(30243403-30243507)
chr2 (7-72)||(30089201-30089266)
chr2 (7-72)||(30125805-30125870)
chr2 (106-150)||(30051289-30051333)
chr2 (106-150)||(30142333-30142377)
[»] chr6 (1 HSPs)
chr6 (13-110)||(34008086-34008183)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 2e-50; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 30051134 - 30051238
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 106  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30051134 acaaatttcatcaagttttttattaaaggcaaaatgaatgtagtgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 30051233  T
Q  107 tataa 111  Q
    |||||    
T  30051234 tataa 30051238  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 30142178 - 30142282
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 106  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30142178 acaaatttcatcaagttttttattaaaggcaaaatgaatgtagtgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 30142277  T
Q  107 tataa 111  Q
    |||||    
T  30142278 tataa 30142282  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 30045789 - 30045893
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||    
T  30045789 acaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggacggaaaattacaaaataaggct 30045888  T
Q  107 tataa 111  Q
    |||||    
T  30045889 tataa 30045893  T

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Target: chr2; HSP #4
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 30050952 - 30051056
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||    
T  30050952 acaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggacggaaaattacaaaataaggct 30051051  T
Q  107 tataa 111  Q
    |||||    
T  30051052 tataa 30051056  T

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Target: chr2; HSP #5
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 30141996 - 30142100
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 106  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||    
T  30141996 acaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggacggaaaattacaaaataaggct 30142095  T
Q  107 tataa 111  Q
    |||||    
T  30142096 tataa 30142100  T

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Target: chr2; HSP #6
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 30045606 - 30045710
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 106  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||    
T  30045606 acaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatatgtgcatggacggaaaattacaaaataaggct 30045705  T
Q  107 tataa 111  Q
    |||||    
T  30045706 tataa 30045710  T

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Target: chr2; HSP #7
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 30050769 - 30050873
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 106  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||    
T  30050769 acaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatatgtgcatggacggaaaattacaaaataaggct 30050868  T
Q  107 tataa 111  Q
    |||||    
T  30050869 tataa 30050873  T

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Target: chr2; HSP #8
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 30141813 - 30141917
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 106  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||    
T  30141813 acaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatatgtgcatggacggaaaattacaaaataaggct 30141912  T
Q  107 tataa 111  Q
    |||||    
T  30141913 tataa 30141917  T

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Target: chr2; HSP #9
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 30243403 - 30243507
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagct 106  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||| |||    
T  30243403 acaaatttaatcaagttttttattaaagacaaaatgaatgtattgaaaaacaacaaccaagtacaatatgtgcatggacggaaaattacaaaataaggct 30243502  T
Q  107 tataa 111  Q
    |||||    
T  30243503 tataa 30243507  T

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Target: chr2; HSP #10
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 30089201 - 30089266
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaa 72  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  30089201 acaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaatcacaaccaagtacaa 30089266  T

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Target: chr2; HSP #11
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 30125805 - 30125870
Alignment:
Q  7 acaaatttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaa 72  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  30125805 acaaatttcatcaagttttttattaaagacaaaatgaatgtattgaaaaatcacaaccaagtacaa 30125870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 30051289 - 30051333
Alignment:
Q  106 ttataacaaaagatgtactcattgcatcacttacaaaacactcta 150  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  30051289 ttataacaaaagatgtactcattgcaccacttacaaaacactcta 30051333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 30142333 - 30142377
Alignment:
Q  106 ttataacaaaagatgtactcattgcatcacttacaaaacactcta 150  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  30142333 ttataacaaaagatgtactcattgcaccacttacaaaacactcta 30142377  T

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Target: chr6 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 34008086 - 34008183
Alignment:
Q  13 ttcatcaagttttttattaaaggcaaaatgaatgtattgaaaaaccacagccaagtacaatatgtgcatggatggaaacttacaaaataaagcttata 110  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||| | ||||||||||| |||| ||||| ||| ||||||||| ||| |||||    
T  34008086 ttcatcaagttttttattacatgcaaaatgaaggtattgaaaaaccacacctaagtacaatatatgcaaggatgaaaaattacaaaattaagtttata 34008183  T

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