View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4760-Insertion-9 (Length: 319)

Name: NF4760-Insertion-9
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4760-Insertion-9
NF4760-Insertion-9
[»] chr3 (31 HSPs)
chr3 (114-213)||(4216928-4217026)
chr3 (235-315)||(117946-118026)
chr3 (235-318)||(37180075-37180158)
chr3 (235-318)||(45234418-45234500)
chr3 (236-318)||(116626-116708)
chr3 (235-318)||(27867778-27867861)
chr3 (235-314)||(44558081-44558160)
chr3 (236-318)||(54185304-54185386)
chr3 (235-311)||(19831131-19831207)
chr3 (235-311)||(32944124-32944200)
chr3 (235-319)||(50614247-50614331)
chr3 (244-318)||(37178649-37178723)
chr3 (235-318)||(19825283-19825366)
chr3 (235-318)||(32942690-32942773)
chr3 (235-318)||(41786585-41786668)
chr3 (235-317)||(32146701-32146783)
chr3 (235-297)||(45387154-45387216)
chr3 (235-319)||(54185834-54185918)
chr3 (8-48)||(4216822-4216862)
chr3 (235-318)||(3670715-3670798)
chr3 (235-318)||(32148109-32148192)
chr3 (235-313)||(50615588-50615665)
chr3 (257-318)||(19669420-19669481)
chr3 (235-318)||(8574983-8575066)
chr3 (231-298)||(53246667-53246734)
chr3 (235-308)||(41926951-41927024)
chr3 (231-308)||(52702204-52702281)
chr3 (235-308)||(53244715-53244788)
chr3 (244-308)||(53439033-53439097)
chr3 (271-315)||(1430418-1430462)
chr3 (235-319)||(44555597-44555681)
[»] chr2 (21 HSPs)
chr2 (235-318)||(21438998-21439081)
chr2 (235-315)||(20721734-20721814)
chr2 (235-317)||(44492583-44492665)
chr2 (235-315)||(23787322-23787402)
chr2 (235-319)||(42488177-42488261)
chr2 (235-318)||(20721058-20721141)
chr2 (235-318)||(43931842-43931925)
chr2 (235-297)||(3105939-3106001)
chr2 (232-317)||(42486754-42486836)
chr2 (242-318)||(38276051-38276127)
chr2 (235-318)||(33001372-33001455)
chr2 (235-318)||(44494010-44494093)
chr2 (244-318)||(20719547-20719621)
chr2 (235-308)||(3104693-3104766)
chr2 (238-318)||(1373269-1373349)
chr2 (235-297)||(18671976-18672038)
chr2 (235-318)||(43933244-43933327)
chr2 (253-317)||(33000691-33000755)
chr2 (235-317)||(1373712-1373793)
chr2 (235-317)||(9190057-9190139)
chr2 (235-315)||(18673325-18673406)
[»] chr4 (26 HSPs)
chr4 (235-318)||(33688377-33688460)
chr4 (235-318)||(31318065-31318148)
chr4 (235-317)||(10322829-10322911)
chr4 (235-317)||(40171410-40171492)
chr4 (235-319)||(53568855-53568939)
chr4 (235-318)||(15562631-15562713)
chr4 (235-314)||(35061329-35061408)
chr4 (236-314)||(25423198-25423276)
chr4 (237-308)||(31316242-31316313)
chr4 (235-318)||(35054886-35054969)
chr4 (235-318)||(44208577-44208660)
chr4 (235-318)||(44209994-44210077)
chr4 (235-312)||(45046730-45046807)
chr4 (235-315)||(53572039-53572119)
chr4 (235-313)||(11669822-11669900)
chr4 (235-312)||(31470664-31470741)
chr4 (235-313)||(13086444-13086522)
chr4 (235-318)||(37329908-37329995)
chr4 (235-316)||(53570710-53570790)
chr4 (232-308)||(25244123-25244199)
chr4 (235-283)||(53569325-53569373)
chr4 (235-282)||(10321405-10321452)
chr4 (235-318)||(40170073-40170156)
chr4 (235-306)||(25421767-25421837)
chr4 (235-297)||(11671156-11671217)
chr4 (235-313)||(45045203-45045281)
[»] chr5 (20 HSPs)
chr5 (235-317)||(41140132-41140214)
chr5 (235-318)||(23318046-23318129)
chr5 (235-317)||(41138728-41138810)
chr5 (231-318)||(26864929-26865016)
chr5 (235-317)||(13921164-13921246)
chr5 (235-315)||(26866191-26866271)
chr5 (235-317)||(23312659-23312741)
chr5 (235-319)||(18951153-18951237)
chr5 (238-314)||(34526727-34526803)
chr5 (235-318)||(43439951-43440034)
chr5 (235-318)||(8218510-8218594)
chr5 (235-314)||(8217218-8217297)
chr5 (235-318)||(20898448-20898531)
chr5 (235-315)||(38693952-38694032)
chr5 (235-314)||(28381327-28381406)
chr5 (235-314)||(34527615-34527694)
chr5 (235-314)||(43441375-43441453)
chr5 (235-315)||(19116861-19116940)
chr5 (235-317)||(38691690-38691772)
chr5 (235-318)||(37811964-37812047)
[»] scaffold0097 (3 HSPs)
scaffold0097 (235-315)||(25563-25643)
scaffold0097 (244-318)||(23385-23459)
scaffold0097 (235-297)||(24907-24969)
[»] chr1 (21 HSPs)
chr1 (235-315)||(37987207-37987287)
chr1 (235-314)||(12368725-12368804)
chr1 (235-318)||(33708021-33708104)
chr1 (235-315)||(36248035-36248115)
chr1 (235-315)||(15053348-15053428)
chr1 (235-319)||(36368403-36368487)
chr1 (235-314)||(30981452-30981531)
chr1 (235-317)||(15054704-15054786)
chr1 (235-318)||(29232155-29232238)
chr1 (235-318)||(33709456-33709539)
chr1 (237-317)||(21795904-21795984)
chr1 (235-307)||(36249380-36249452)
chr1 (246-318)||(46595866-46595938)
chr1 (235-317)||(21794781-21794862)
chr1 (266-315)||(29231070-29231119)
chr1 (235-314)||(534127-534206)
chr1 (235-318)||(36362180-36362263)
chr1 (232-317)||(51839894-51839979)
chr1 (266-318)||(30982868-30982920)
chr1 (235-318)||(12251895-12251978)
chr1 (235-318)||(12898900-12898983)
[»] scaffold0651 (2 HSPs)
scaffold0651 (235-318)||(5522-5605)
scaffold0651 (237-308)||(7384-7455)
[»] scaffold0003 (2 HSPs)
scaffold0003 (235-318)||(239209-239292)
scaffold0003 (253-315)||(240512-240574)
[»] chr8 (30 HSPs)
chr8 (235-318)||(37705836-37705919)
chr8 (235-317)||(13324062-13324144)
chr8 (235-318)||(13322886-13322969)
chr8 (232-311)||(21136458-21136537)
chr8 (235-318)||(37707233-37707316)
chr8 (235-318)||(39338029-39338112)
chr8 (235-315)||(36062503-36062583)
chr8 (235-318)||(24451180-24451263)
chr8 (235-318)||(41280187-41280270)
chr8 (235-309)||(16472692-16472766)
chr8 (235-309)||(16477263-16477337)
chr8 (235-313)||(39336716-39336794)
chr8 (235-319)||(21575510-21575594)
chr8 (235-315)||(24452613-24452693)
chr8 (235-318)||(42816018-42816101)
chr8 (235-317)||(42817218-42817300)
chr8 (235-318)||(1692588-1692671)
chr8 (235-318)||(39308278-39308361)
chr8 (235-316)||(21135022-21135103)
chr8 (235-318)||(45021964-45022047)
chr8 (235-308)||(35368889-35368962)
chr8 (235-314)||(35370203-35370281)
chr8 (235-318)||(35864170-35864253)
chr8 (235-318)||(39310629-39310712)
chr8 (242-318)||(16478614-16478690)
chr8 (235-298)||(14840489-14840552)
chr8 (255-318)||(36063934-36063996)
chr8 (235-271)||(35862671-35862707)
chr8 (232-318)||(32243354-32243440)
chr8 (235-308)||(44893535-44893608)
[»] chr6 (11 HSPs)
chr6 (235-318)||(15119351-15119434)
chr6 (235-318)||(7855399-7855482)
chr6 (235-314)||(7852250-7852329)
chr6 (235-318)||(17246591-17246674)
chr6 (235-318)||(22971595-22971678)
chr6 (235-318)||(23816720-23816803)
chr6 (235-315)||(5080021-5080100)
chr6 (235-318)||(22972296-22972379)
chr6 (235-318)||(23816019-23816102)
chr6 (235-307)||(3335689-3335761)
chr6 (235-319)||(21108596-21108680)
[»] chr7 (24 HSPs)
chr7 (235-318)||(46043369-46043452)
chr7 (235-315)||(38198764-38198844)
chr7 (235-318)||(38875069-38875152)
chr7 (235-318)||(43830654-43830737)
chr7 (235-318)||(45959170-45959253)
chr7 (232-318)||(33624484-33624570)
chr7 (235-315)||(43084351-43084431)
chr7 (235-315)||(45957808-45957888)
chr7 (235-318)||(33625916-33625999)
chr7 (235-318)||(43831959-43832042)
chr7 (235-319)||(15131838-15131922)
chr7 (235-318)||(3496690-3496773)
chr7 (235-312)||(46331883-46331959)
chr7 (235-314)||(43309630-43309709)
chr7 (235-313)||(43083031-43083108)
chr7 (235-315)||(3495361-3495440)
chr7 (235-314)||(38200083-38200162)
chr7 (235-318)||(43308458-43308541)
chr7 (235-314)||(46044808-46044887)
chr7 (235-318)||(46330498-46330581)
chr7 (235-297)||(38873884-38873946)
chr7 (235-314)||(44168295-44168371)
chr7 (235-308)||(44166845-44166918)
chr7 (234-308)||(37107357-37107431)
[»] scaffold0093 (1 HSPs)
scaffold0093 (235-312)||(49272-49349)
[»] scaffold0287 (1 HSPs)
scaffold0287 (235-318)||(231-314)
[»] scaffold0385 (1 HSPs)
scaffold0385 (235-315)||(10463-10543)
[»] scaffold0005 (1 HSPs)
scaffold0005 (235-318)||(282614-282697)
[»] scaffold0148 (2 HSPs)
scaffold0148 (235-295)||(34675-34735)
scaffold0148 (238-317)||(38891-38970)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 4216928 - 4217026
Alignment:
Q  114 tttgaaacagttgttttgtttatagccaagagagagagtttaatgatgaggagcagaaaacaacatgtggaggttgatgagataattattggtttttatt 213  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||    
T  4216928 tttgaaacagttgttttgtttatagcca-gagagagagtttaatgatgaggagcaaaaaacaacatgtgaaggttgatgagacaattattggtttttatt 4217026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 118026 - 117946
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||||    
T  118026 ttaattatgttttaggtccctataaataggcgtgtttccaacattagtctctacttaaattttattaaatttttggtcccc 117946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 37180158 - 37180075
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||| |||||||||||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  37180158 ttaattacgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttggtccccaac 37180075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 45234418 - 45234500
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||    
T  45234418 ttaattatgttttaggtcc-tataaataggtgcgtttccaacattagtccctacttaaattttattaaatttttgatccccaac 45234500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 116626 - 116708
Alignment:
Q  236 taattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  116626 taattatgttttaggtccctataaataagcgtgtttccaacattagtccctacttaaattttattaaatttttggtccccaac 116708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 27867778 - 27867861
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||||  ||||||||||||||| ||||||||||||| ||||    
T  27867778 ttaattatgttttaggtccctataaataggcgagttttcaacattagttcatacttaaattttattaaatttttggtcctcaac 27867861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 44558160 - 44558081
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||| |||||||| |||||    
T  44558160 ttaattatgttttaggtccctataaatagacgcgtttccaacattagtccctacttaaattttattaaatttttcgtccc 44558081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 54185304 - 54185386
Alignment:
Q  236 taattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||   |||||||||||||| ||||||||||||| ||||    
T  54185304 taattatgttttaggtccttataaataggcgcgtttccaacattagttcctacttaaattttattaaatttttggtccacaac 54185386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 19831207 - 19831131
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggt 311  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||||  |||||||||||||| |||||||||||    
T  19831207 ttaattatgtttaaggtccctataaataagtgtgtttccaacattagtccctacttaaattttattaaatttttggt 19831131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 32944200 - 32944124
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggt 311  Q
    ||||||||||||||||||||||||||||||  |||||  ||||||||||| |||||||||||||| |||||||||||    
T  32944200 ttaattatgttttaggtccctataaataggcacgtttttaacattagtctctacttaaattttattaaatttttggt 32944124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 50614247 - 50614331
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaaca 319  Q
    |||| ||||||||| ||| ||||||||||| |||||| |||||||||||  |||||||||||||| |||||||||||||||||||    
T  50614247 ttaaatatgttttaagtctctataaataggcgcgttttcaacattagtccctacttaaattttattaaatttttggtccccaaca 50614331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 37178649 - 37178723
Alignment:
Q  244 ttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||||| | ||||||||||||| || ||||||||||||||| ||||||||| ||||||||    
T  37178649 ttttaggtccctataaataggcgtgtttccaacattaatccatacttaaattttattaaatttttgatccccaac 37178723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 19825283 - 19825366
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||| | ||||||||||||||||  | || |||||||||||||| ||||||||||| || ||||||||||||||||||    
T  19825283 ttaattatgtctaaggtccctataaatagacgtgtctccaacattagtctctacttaaatttaattaaatttttggtccccaac 19825366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 32942690 - 32942773
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||| |||   ||||| ||||||||||  |||||||||||||| ||||||||| ||||||||    
T  32942690 ttaattatgttttaggtccctataaagaggcatgtttctaacattagtccctacttaaattttattaaatttttgatccccaac 32942773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 41786668 - 41786585
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||| ||||| |||||||||  ||||||||||||| ||  |||||||||||||| ||||||||| ||||||||    
T  41786668 ttaattatgttttagatccctgtaaataggtttgtttccaacattattccctacttaaattttattaaatttttgatccccaac 41786585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 32146701 - 32146783
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    ||||||||||||||||||| |||||||||| |  ||||||||||||||  ||||||||||||||| ||||||||  |||||||    
T  32146701 ttaattatgttttaggtccatataaataggcgtatttccaacattagttcatacttaaattttattaaattttttatccccaa 32146783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 45387154 - 45387216
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaatttt 297  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||| |||||||||||||    
T  45387154 ttaattaggttttacgtccctataaataggcgcgtttccaacattagtccatacttaaatttt 45387216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 54185918 - 54185834
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaaca 319  Q
    |||||||||||||| || | |||||||||| | |||| |||||||| || ||||||||||||||| ||||||||| |||||||||    
T  54185918 ttaattatgttttatgttcttataaataggcgtgttttcaacattaatccatacttaaattttattaaatttttgatccccaaca 54185834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 4216822 - 4216862
Alignment:
Q  8 ggcatgaagaagaaaatgaaggagggcaaaattggaatttg 48  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4216822 ggcatgaagaagaaaatgaaggagggcaaaattggaatttg 4216862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 3670798 - 3670715
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| |||||| |||||||||  | ||||||||||||  ||| |||||||||||||| | ||||||||||| ||||    
T  3670798 ttaattatgtttaaggtccttataaatagacgtgtttccaacattgatctctacttaaattttattatatttttggtcctcaac 3670715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 32148192 - 32148109
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||   |  ||||||||||| |||||||| |||| ||||    
T  32148192 ttaattatgttttaggtccctataaataggcgtatttccaacattagttcctgtttaaattttattaaattttttgtcctcaac 32148109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 50615665 - 50615588
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcc 313  Q
    ||||||||||||||||||  |||||||||| ||||||| ||||||||||  |||||| ||| ||| |||||||||||||    
T  50615665 ttaattatgttttaggtct-tataaataggcgcgtttctaacattagtccttacttacattctattaaatttttggtcc 50615588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 19669420 - 19669481
Alignment:
Q  257 taaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||| ||||||||||||||||||  |||||||||||||| ||||||||| || |||||    
T  19669420 taaataggcgcgtttccaacattagtccctacttaaattttattaaatttttgatctccaac 19669481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 8574983 - 8575066
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||||||||| ||||| ||| | ||||||||||  || ||| ||||||||||| ||||||||  ||||||||    
T  8574983 ttaattatgtttaaggtccctacaaataagtgagcttccaacattgatccatatttaaattttattaaatttttcatccccaac 8575066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 53246734 - 53246667
Alignment:
Q  231 tggattaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaatttta 298  Q
    |||||||||||||||| |||||| |||||||| ||| |||| |||||||| ||  |||||||||||||    
T  53246734 tggattaattatgtttaaggtccatataaataagtgtgttttcaacattaatccctacttaaatttta 53246667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 41926951 - 41927024
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    |||||||||||| ||||||||||||||| | | | |||||||||| |||  || ||||||||||| ||||||||    
T  41926951 ttaattatgtttaaggtccctataaataagcgagcttccaacattggtccctatttaaattttattaaattttt 41927024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 52702281 - 52702204
Alignment:
Q  231 tggattaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    |||||||||||||||| ||||||||| ||||||||| | |||||||||| |||  || | ||||| ||| ||||||||    
T  52702281 tggattaattatgtttaaggtccctacaaataggtgagcttccaacattggtccctattaaaattatattaaattttt 52702204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 53244715 - 53244788
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    |||||||||||| |||||| || |||||||  ||||| |||||||||||  |||||||||||||  ||||||||    
T  53244715 ttaattatgtttgaggtccatacaaataggcacgttttcaacattagtccctacttaaattttaataaattttt 53244788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 53439033 - 53439097
Alignment:
Q  244 ttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    ||||| ||||||||||||||| | ||||| |||||||||   |||||||||||||| ||||||||    
T  53439033 ttttatgtccctataaataggcgtgtttctaacattagttcctacttaaattttattaaattttt 53439097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 1430462 - 1430418
Alignment:
Q  271 tccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||    
T  1430462 tccaacatcagtccctacttaaattttattaaatttttggtcccc 1430418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 44555597 - 44555681
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaaca 319  Q
    |||||||| ||| | |||| |||||||| ||| | |||||||||| |||| || ||||||||||| || |||||  |||||||||    
T  44555597 ttaattatatttaaagtccatataaataagtgggcttccaacattggtctctatttaaattttattaagtttttcatccccaaca 44555681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 21438998 - 21439081
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21438998 ttaattatgttttagatccctataaataggcgcgtttccaacattagtctatacttaaattttattaaatttttggtccccaac 21439081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 20721814 - 20721734
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||    
T  20721814 ttaattatgttttaggtccctataaataggcgcgttttcaacattagtccatacttaaattttattaaatttttggtcccc 20721734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 44492583 - 44492665
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| |||||| || |||||||    
T  44492583 ttaattatgttttaggtccctataaataggcgcgtttccaacattaatccatacttaaattttattaaatttgtgatccccaa 44492665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 23787322 - 23787402
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||   ||||||||||||| |||||||||||||||    
T  23787322 ttaattatgttttaggtccctataaataggcgtgtttccaacattagtccccacttaaattttattaaatttttggtcccc 23787402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 42488261 - 42488177
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaaca 319  Q
    |||||||||||||||||||||| ||||||||| |||| ||||||||||   |||||||||||||| |||||||||||||||||||    
T  42488261 ttaattatgttttaggtccctaaaaataggtgtgttttcaacattagttcctacttaaattttattaaatttttggtccccaaca 42488177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 20721141 - 20721058
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||||||||||||||  | |||| ||||||||||  |||||||||||||| ||||||||||||||||||    
T  20721141 ttaattatgttttaggtccctataaataggcacatttctaacattagtccctacttaaattttattaaatttttggtccccaac 20721058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 43931842 - 43931925
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||  | |||| ||| |||||||| |||||||||||||| ||||||||||||||||||    
T  43931842 ttaattatgttttaggtccctataaatagcggtgttttcaatattagtctctacttaaattttattaaatttttggtccccaac 43931925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 3106001 - 3105939
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaatttt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  3106001 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtccctacttaaatttt 3105939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 42486754 - 42486836
Alignment:
Q  232 ggattaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    ||||||||||| |||||||||  |||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  42486754 ggattaattat-ttttaggtc--tataaataggcgcgtttccaacattagtccatacttaaattttattaaatttttggtccccaa 42486836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 38276051 - 38276127
Alignment:
Q  242 tgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||||||| |  |||||||||||||||| ||| |||||||||| ||||||||||||||||||    
T  38276051 tgttttaggtccctataaataggcgtatttccaacattagtctctacataaattttattaaatttttggtccccaac 38276127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 33001455 - 33001372
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||  | |||||||||||| ||||||||| ||||||||    
T  33001455 ttaattatgttttaggtccctataaatagacgtgtttccaacattagtccctgcttaaattttattaaatttttgatccccaac 33001372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 44494093 - 44494010
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||| ||||||| || | ||||||||||||||||  |||||||||||||| ||||||||||||| ||||    
T  44494093 ttaattatgttttaggtccttataaattggcgtgtttccaacattagtccctacttaaattttattaaatttttggtcctcaac 44494010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 20719621 - 20719547
Alignment:
Q  244 ttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| | ||||||| ||||||||    
T  20719621 ttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattacatttttgatccccaac 20719547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 3104693 - 3104766
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    |||||||||||||||||||||||||||| | | |||||||||||||||  ||||||||||||||| ||||||||    
T  3104693 ttaattatgttttaggtccctataaataagcgtgtttccaacattagttcatacttaaattttattaaattttt 3104766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 1373269 - 1373349
Alignment:
Q  238 attatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||   ||||||||||||||||  ||| |||||||||| |||||||||||| |||||    
T  1373269 attatgttttaggtccctataaataggcatgtttccaacattagtccctacataaattttattaaatttttggtcaccaac 1373349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 18671976 - 18672038
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaatttt 297  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||||||    
T  18671976 ttaattatgttttagatccatataaataggtgcgtttccaacattagtccttacttaaatttt 18672038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 43933327 - 43933244
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||| |||||||||| |||||||||| | |||| |||||||||||| |||||||||||||| ||||| ||  ||||||||    
T  43933327 ttaattattttttaggtccgtataaataggcgtgttttcaacattagtctctacttaaattttattaaattctttatccccaac 43933244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 33000691 - 33000755
Alignment:
Q  253 cctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||| ||||||||||| |||||   |||||||||||||| |||||||||||||||||    
T  33000691 cctataaataggcgcgtttccaacgttagttcctacttaaattttattaaatttttggtccccaa 33000755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 1373793 - 1373712
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    ||||||||||||||||| | |||||||||  | ||||||||||||||||  |||||||||||||| |||||||| ||| ||||    
T  1373793 ttaattatgttttaggttc-tataaatagacgtgtttccaacattagtccctacttaaattttattaaattttttgtcaccaa 1373712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 9190057 - 9190139
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||| ||||| || |||||||   |||||| |||||||||| ||||||||||||||  ||| |||||||||||||    
T  9190057 ttaattatgtttaaggtctctgtaaatagtctcgtttctaacattagtccatacttaaattttaataaacttttggtccccaa 9190139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 18673406 - 18673325
Alignment:
Q  235 ttaattatgttttaggtcc-ctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||   ||||||||||| | ||||||||||||| ||  || ||||||||||| |||||||||||||||    
T  18673406 ttaattatgttttaggttttctataaataggcgtgtttccaacattaatccctatttaaattttattaaatttttggtcccc 18673325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 33688377 - 33688460
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||    
T  33688377 ttaattatgttttaggtccctataaataggtgcgtttccaacattagttcctacttaaattttattaaatttttggtccccaac 33688460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 31318148 - 31318065
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||| ||||||||||||||||||    
T  31318148 ttaattatgttttaggtccctataaataggcgcgtttctaacattagtccctacttaaattttattaaatttttggtccccaac 31318065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 10322911 - 10322829
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  10322911 ttaattatgttttaggtccctataaataggcgagtttccaacattagtccctacttaaattttattaaatttttggtccccaa 10322829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 40171492 - 40171410
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||    
T  40171492 ttaattatgtttaaggtctctataaataggtgcgtttccaacattaatctctacttaaattttattaaattttttgtccccaa 40171410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 53568855 - 53568939
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaaca 319  Q
    ||||||||||||||||| |||||||||||| | |||| |||||||| ||| |||||||||||||| |||||||||||||||||||    
T  53568855 ttaattatgttttaggttcctataaataggcgtgttttcaacattaatctttacttaaattttattaaatttttggtccccaaca 53568939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 15562631 - 15562713
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||| |||||  |||||||||||||||||    
T  15562631 ttaattatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaa-tttattgaatttttggtccccaac 15562713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 35061408 - 35061329
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||| ||||||||| ||||    
T  35061408 ttaattatgttttaggtccctataaataggcgcgttttcaacattagtccctacttaaattttattaaatttttgatccc 35061329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 314
Target Start/End: Complemental strand, 25423276 - 25423198
Alignment:
Q  236 taattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  25423276 taattatgttttaggatcctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttggtccc 25423198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 31316242 - 31316313
Alignment:
Q  237 aattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||||| ||||||||    
T  31316242 aattatgttttagatccttataaataggtgcgtttccaacattagtccctacttaaattttattaaattttt 31316313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 35054886 - 35054969
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||  || ||| ||||||||||   |||||||||||||| ||||||||||||||||||    
T  35054886 ttaattatgttttaggtccctataaatagacgcattttcaacattagttcctacttaaattttattaaatttttggtccccaac 35054969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 44208577 - 44208660
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||  |||||||||  |||||| |||||||||||  |||||||||||||| ||||||||||||||||||    
T  44208577 ttaattatgttttaggtctttataaatagacgcgttttcaacattagtccctacttaaattttattaaatttttggtccccaac 44208660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 44210077 - 44209994
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||| |||||||| ||||||||||||||| ||||||  ||||||||||| |||||||||||||| ||||||||| ||||||||    
T  44210077 ttaatcatgttttacgtccctataaataggcgcgtttttaacattagtctttacttaaattttattaaatttttgatccccaac 44209994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 45046807 - 45046730
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtc 312  Q
    |||||||| ||| ||||||||||||||||  ||||||||||||||||||  |||||||||||||| ||||||||||||    
T  45046807 ttaattatctttaaggtccctataaatagacgcgtttccaacattagtccctacttaaattttattaaatttttggtc 45046730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 53572119 - 53572039
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||| |||||||| |||||||||||||| ||||  ||||||||||| |||||||||||||| ||||||||| |||||    
T  53572119 ttaattatattttaggttcctataaataggtgtgtttttaacattagtctctacttaaattttattaaatttttgatcccc 53572039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 11669822 - 11669900
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcc 313  Q
    |||||| ||||||||||||||||||| ||| ||||||||||||||||||  || ||||||||||| |||| ||||||||    
T  11669822 ttaattgtgttttaggtccctataaaaaggcgcgtttccaacattagtccctatttaaattttattaaatatttggtcc 11669900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 31470664 - 31470741
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtc 312  Q
    ||||||||||||||||||| ||||||||||   |||| |||||||||||  |||||||||||||| ||||||||||||    
T  31470664 ttaattatgttttaggtccttataaataggcatgttttcaacattagtccctacttaaattttattaaatttttggtc 31470741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 13086522 - 13086444
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcc 313  Q
    |||||||||||| |||| |||||||||||| || ||| |||||||||||   ||||||||||||| |||||||||||||    
T  13086522 ttaattatgtttaaggttcctataaataggcgcattttcaacattagtcccaacttaaattttattaaatttttggtcc 13086444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 37329995 - 37329908
Alignment:
Q  235 ttaattatgttttaggtccctataaatag----gtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||    ||| ||||||||||||||||  ||| || ||||| | ||||||||||||||||||    
T  37329995 ttaattatgttttaggtccctataaatagataggtgtgtttccaacattagtccctacatacattttgttaaatttttggtccccaac 37329908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 53570710 - 53570790
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccca 316  Q
    ||||||||||||||||| | ||||||||||| |||||  |||||||||| ||||||||||||||| |||||| || ||||||    
T  53570710 ttaattatgttttaggttc-tataaataggttcgtttttaacattagtccatacttaaattttattaaatttatgttcccca 53570790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 25244199 - 25244123
Alignment:
Q  232 ggattaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||||| |   || ||||||||||| ||||||||    
T  25244199 ggattaattatgttttgagtccctataaataggcgcgtttccaacattaattcctatttaaattttattaaattttt 25244123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 53569373 - 53569325
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtc 283  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  53569373 ttaattatgttttaggtccctataaatcggagcgtttccaacattagtc 53569325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 10321405 - 10321452
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagt 282  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  10321405 ttaattatgttttagatccctataaataggcgcgtttccaacattagt 10321452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 40170073 - 40170156
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||| || |||||||   |||||||||||||||| ||| ||||||||||| | |||||  |||||||||    
T  40170073 ttaattatgttttaggtccttacaaataggcttgtttccaacattagtccatatttaaattttattatattttcagtccccaac 40170156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 25421767 - 25421837
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattt 306  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||  ||||  |||||||||||||| ||||||    
T  25421767 ttaattatgttttaggtcc-tataaataggtgcattttcaacaacagtccttacttaaattttattaaattt 25421837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 11671217 - 11671156
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaatttt 297  Q
    ||||||||| ||||||||||||||| |||| |||||| ||| |||||||| ||||||||||||    
T  11671217 ttaattatgatttaggtccctataa-taggcgcgttttcaaaattagtctctacttaaatttt 11671156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 45045203 - 45045281
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcc 313  Q
    |||||||||||| | || |||||||||| | || |||||||||||||||  || ||||||||||| | |||||| ||||    
T  45045203 ttaattatgtttaaagttcctataaatatgcgcatttccaacattagtccctatttaaattttattatatttttagtcc 45045281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 41140214 - 41140132
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  41140214 ttaattatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttggtccccaa 41140132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 23318129 - 23318046
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  23318129 ttaattatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttggtccccaac 23318046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 41138728 - 41138810
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||||| |||||||||||||||||    
T  41138728 ttaattatgttttaggtccctataaataggcgcgtctccaacattagtccctacttaaattttattaaatttttggtccccaa 41138810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 26864929 - 26865016
Alignment:
Q  231 tggattaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||||| | ||||||| ||||||||||  ||||||||||||||  |||||||||||||||||    
T  26864929 tggattaattatgttttaggtccctataaataagcgcgtttctaacattagtccctacttaaattttattcaatttttggtccccaac 26865016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 13921246 - 13921164
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||  || ||||||||||| |||||||||||||||||    
T  13921246 ttaattatgttttaggtccttataaataggcgcgtttccaacattagtccctatttaaattttattaaatttttggtccccaa 13921164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 26866271 - 26866191
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||||| |||||    
T  26866271 ttaattatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttgctcccc 26866191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 23312659 - 23312741
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| |   |||||||||||||| |||||||||||||||||    
T  23312659 ttaattatgttttaggtccctataaataggcgtgtttccaacattaattcctacttaaattttattaaatttttggtccccaa 23312741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 18951237 - 18951153
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaaca 319  Q
    ||||||||||||||||||| |||||||| | | ||||||||||||||||  |||||||||||||| ||||||||| |||||||||    
T  18951237 ttaattatgttttaggtccttataaataagcgtgtttccaacattagtccctacttaaattttattaaatttttgatccccaaca 18951153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 34526727 - 34526803
Alignment:
Q  238 attatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    ||||||||||||||||||||||||||| | ||||||||||||| | | |||||||||||||| ||||||||||||||    
T  34526727 attatgttttaggtccctataaataggcgtgtttccaacattaatttctacttaaattttattaaatttttggtccc 34526803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 43439951 - 43440034
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||| ||||||||||||||||||||| | |||| ||||||||||   |||||||||||||| ||||||||||||||||||    
T  43439951 ttaattatcttttaggtccctataaataggcgtgttttcaacattagttcctacttaaattttattaaatttttggtccccaac 43440034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 8218594 - 8218510
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaaca-ttagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||| ||||||||| ||||||||||||| |||||||||| ||||||  |||||||||||||| || |||||||||||||||    
T  8218594 ttaattatattttaggtctctataaataggtgtgtttccaacatttagtccctacttaaattttattaagtttttggtccccaac 8218510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 8217218 - 8217297
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||| |   || |||||||||| ||||||||||||||    
T  8217218 ttaattatgttttaggttcctataaataggtgtgtttccaacattagccccaacataaattttattaaatttttggtccc 8217297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 20898448 - 20898531
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||| |   ||||||||| ||| ||||||||||||||||||    
T  20898448 ttaattatgtttaaggtccctataattaggtgtgtttccaacattagccccaacttaaattgtattaaatttttggtccccaac 20898531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 38694032 - 38693952
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||| | |||||||| |||| ||   ||||||||||||| ||||||||| |||||    
T  38694032 ttaattatgttttaggtccctataaataggcgtgtttccaatattaatccccacttaaattttattaaatttttgatcccc 38693952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 28381406 - 28381327
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    ||||||||||||||||||| |||||||| | ||||||  || ||||||| |||||||||||||||  |||||||||||||    
T  28381406 ttaattatgttttaggtccttataaatatgcgcgtttttaatattagtccatacttaaattttatataatttttggtccc 28381327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 34527694 - 34527615
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    ||||||||||||||| || ||||||||||| | ||||||||||||| |   |||||||||||||| ||||||||||||||    
T  34527694 ttaattatgttttagatctctataaataggcgtgtttccaacattaattcctacttaaattttattaaatttttggtccc 34527615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 43441453 - 43441375
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    |||||||||||| ||||| ||| ||||||| | |||| |||||||||||| |||||||||||||| ||||||||||||||    
T  43441453 ttaattatgttt-aggtctctaaaaataggcgtgttttcaacattagtctctacttaaattttattaaatttttggtccc 43441375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 19116861 - 19116940
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||| |||||  ||||||||||| ||| ||| |||||||  |||||||||||||| |||||||||||||||    
T  19116861 ttaattatgttttatgtcccg-taaataggtgcattttcaatattagtccctacttaaattttattaaatttttggtcccc 19116940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 38691690 - 38691772
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||||||||| ||||| ||||| |  |||| ||||||| ||  |||||||||||||| |||| ||||||||||||    
T  38691690 ttaattatgttttaggtctctatatataggcgtttttctaacattaatccctacttaaattttattaaatatttggtccccaa 38691772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 37811964 - 37812047
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||||||||| ||||| | | | |||||||||| |||  |||| ||||||||| ||||||||  ||||||||    
T  37811964 ttaattatgtttaaggtccctacaaataagcgagcttccaacattggtccctactaaaattttattaaatttttcatccccaac 37812047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 25643 - 25563
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |||||||||||||||    
T  25643 ttaattatgttttaggtccctataaataggcgcgttttcaacattagtccatacttaaattttattaaatttttggtcccc 25563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 23459 - 23385
Alignment:
Q  244 ttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| | ||||||| ||||||||    
T  23459 ttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattacatttttgatccccaac 23385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 24969 - 24907
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaatttt 297  Q
    ||||||||||||||||||||||||||||||  | |||| ||||||||||  ||||||||||||    
T  24969 ttaattatgttttaggtccctataaataggcacatttctaacattagtccctacttaaatttt 24907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 37987287 - 37987207
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  37987287 ttaattatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttggtcccc 37987207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 12368804 - 12368725
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  12368804 ttaattatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttggtccc 12368725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 33708021 - 33708104
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  33708021 ttaattatgttttaggttcctataaataggcacgtttccaacattagtccatacttaaattttattaaatttttggtccccaac 33708104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 36248035 - 36248115
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  36248035 ttaattatgttttaggtccctataaatagacgcgtttccaacattagtccctacttaaattttattaaatttttggtcccc 36248115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 15053348 - 15053428
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||| |||| ||||||||||    
T  15053348 ttaattatgttttaggtccctataaataggcgcgttttcaacattagtccctacttaaattttattaaatatttggtcccc 15053428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 36368487 - 36368403
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaaca 319  Q
    ||||||||||||||||||| |||||||||| ||||||||||| ||||||  |||||||||||||| ||||||||| |||||||||    
T  36368487 ttaattatgttttaggtccttataaataggcgcgtttccaaccttagtccctacttaaattttattaaatttttgatccccaaca 36368403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 30981452 - 30981531
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||||||  |||||||||||||| ||||||||||||||    
T  30981452 ttaattatgttttaggtcccgatatataggcgcgtttccaacattagtccctacttaaattttattaaatttttggtccc 30981531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 15054786 - 15054704
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||   |||| ||||||||| |||||||||||||||||    
T  15054786 ttaattatgttttaagtccctataaataggtgtgtttccaacattagtacctactaaaattttattaaatttttggtccccaa 15054704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 29232238 - 29232155
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||| |  |||||||||||| ||  |||||||||||||| ||||||||||| ||||||    
T  29232238 ttaattatgttttaggtccctataaataggcgtatttccaacattaatccctacttaaattttattaaatttttggttcccaac 29232155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 33709539 - 33709456
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||| | ||||| || |||||||  |||||||||||||| ||||||||| ||||||||    
T  33709539 ttaattatgttttaggtccctataaataggcgtgtttctaatattagtccctacttaaattttattaaatttttgatccccaac 33709456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 21795984 - 21795904
Alignment:
Q  237 aattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||| ||||||||||||||||  | |||| |||||| ||||  |||||||||||||| |||||||||||||||||    
T  21795984 aattatgtttaaggtccctataaatagacgtgtttacaacatcagtccctacttaaattttattaaatttttggtccccaa 21795904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 36249452 - 36249380
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttt 307  Q
    |||||||||||||| || |||||||||||| |||||| |||||||||||  |||||||||||||| |||||||    
T  36249452 ttaattatgttttaagttcctataaataggcgcgttttcaacattagtccctacttaaattttattaaatttt 36249380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 46595866 - 46595938
Alignment:
Q  246 ttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||| |||||| |||| ||||||  |||||||||||||| |||||||| |||||||||    
T  46595866 ttaggtccctataaataggcgcgttttcaacgttagtccctacttaaattttattaaattttttgtccccaac 46595938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 21794781 - 21794862
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||| |||||||| |||||||  | |||||||||||||  |  |||||||||||||| |||||||||||||||||    
T  21794781 ttaattatgtttaaggtccct-taaatagccgtgtttccaacattaacccctacttaaattttattaaatttttggtccccaa 21794862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 29231070 - 29231119
Alignment:
Q  266 gcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  29231070 gcgtttccaacattagtccttacttaaattttattaaatttttggtcccc 29231119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 534206 - 534127
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    |||||||||||||||||| | ||||||||| | |||| ||||||||||   || ||||||||||| ||||||||| ||||    
T  534206 ttaattatgttttaggtctcaataaataggcgtgttttcaacattagttcctatttaaattttattaaatttttgatccc 534127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 36362180 - 36362263
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||| | ||||||||||   ||||||||||||| ||   | ||||||||||| |||||||| |||||||||    
T  36362180 ttaattatgttttaggttcttataaataggcatgtttccaacattaatccccatttaaattttattaaatttttagtccccaac 36362263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 51839894 - 51839979
Alignment:
Q  232 ggattaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    ||||||||||||||| | ||||||||||||| | | | |||||||||| |||  || ||||||||||| ||||||||  |||||||    
T  51839894 ggattaattatgtttaaagtccctataaataagcgagcttccaacattggtccctatttaaattttattaaatttttcatccccaa 51839979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 30982920 - 30982868
Alignment:
Q  266 gcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||  |||||||||||||| ||||||||  ||||||||    
T  30982920 gcgtttccaacattagtccctacttaaattttattaaattttttatccccaac 30982868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 12251978 - 12251895
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| | ||||||||||||| | | | |||||||||| |||  || ||||||||||| ||||||||  ||||||||    
T  12251978 ttaattatgtttaaagtccctataaataagcgagcttccaacattggtccctatttaaattttattaaatttttcatccccaac 12251895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 12898983 - 12898900
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||||||||||||||| | | | |||||||||| ||   || ||||||||||| ||||||||  ||||||||    
T  12898983 ttaattatgtttaaggtccctataaataagcgagcttccaacattggttcctatttaaattttattaaatttttcatccccaac 12898900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 5522 - 5605
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||| ||||||||||||||||||    
T  5522 ttaattatgttttaggtccctataaataggcgcgtttctaacattagtccctacttaaattttattaaatttttggtccccaac 5605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 7455 - 7384
Alignment:
Q  237 aattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||||| ||||||||    
T  7455 aattatgttttagatccttataaataggtgcgtttccaacattagtccctacttaaattttattaaattttt 7384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 239209 - 239292
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||  |||||||||||||||||    
T  239209 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtccctacctaaattttattcaatttttggtccccaac 239292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 240574 - 240512
Alignment:
Q  253 cctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||| | ||||||| ||||||||| | |||||||||||||| |||||||||||||||    
T  240574 cctataaatatgcgcgtttctaacattagtttttacttaaattttattaaatttttggtcccc 240512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 37705836 - 37705919
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||| ||||||||||||||||||    
T  37705836 ttaattatgttttaggtccctataaataggcgcgttttcaacattagtccctacttaaattttattaaatttttggtccccaac 37705919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 13324144 - 13324062
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| ||||||||| |||||||    
T  13324144 ttaattatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttgatccccaa 13324062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 13322886 - 13322969
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  13322886 ttaattatgttttaggtccctataaataggcatgtttccaacattagtccctacttaaattttattaaatttttggtccccaac 13322969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 21136537 - 21136458
Alignment:
Q  232 ggattaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggt 311  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||||||| |||||||||||    
T  21136537 ggattaattatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttggt 21136458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 37707316 - 37707233
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||||||||||| ||||||||| ||||||||    
T  37707316 ttaattatgttttaggtccctataaacaggcgcgtttccaacattagtccctacttaaattttattaaatttttgatccccaac 37707233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 39338112 - 39338029
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||| |||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  39338112 ttaattatgttttagatccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttggtccccaac 39338029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 36062503 - 36062583
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    ||||||||||||||||||| |||||||||| |||||| |||||||||||| || ||||||||||| |||||||||||||||    
T  36062503 ttaattatgttttaggtccttataaataggcgcgttttcaacattagtctctatttaaattttattaaatttttggtcccc 36062583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 24451180 - 24451263
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||||| ||||||||    
T  24451180 ttaattatattttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttgatccccaac 24451263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 41280187 - 41280270
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||| | |||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||| |||||    
T  41280187 ttaattatgttttagattcctataaataggcgcgtttccaacattagtatttacttaaattttattaaatttttggtctccaac 41280270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 16472692 - 16472766
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttg 309  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| |||||||||    
T  16472692 ttaattatattttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttg 16472766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 16477263 - 16477337
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttg 309  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| |||||||||    
T  16477263 ttaattatattttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttg 16477337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 39336716 - 39336794
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcc 313  Q
    |||||||||||||||||||||||||||||| || ||||||||||||| |  |||||||||||||| |||||||||||||    
T  39336716 ttaattatgttttaggtccctataaataggcgcatttccaacattagaccctacttaaattttattaaatttttggtcc 39336794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 21575510 - 21575594
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaaca 319  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||   |||||||||||||| ||||||||| |||||||||    
T  21575510 ttaattatgttttaggtccttataaatagacgcgtttccaacattagttcctacttaaattttattaaatttttgatccccaaca 21575594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 24452693 - 24452613
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||||||  |||||||||||||| || ||||||||||||    
T  24452693 ttaattatgttttaagtccctataaataggcgtgtttccaacattagtccctacttaaattttattaattttttggtcccc 24452613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 42816018 - 42816101
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||||||||||||||| | | | ||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  42816018 ttaattatgtttaaggtccctataaatacgcgtgcttccaacattagtccctacttaaattttattaaatttttggtccccaac 42816101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 42817300 - 42817218
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||||  |||||| ||||||| |||||||| ||||||||    
T  42817300 ttaattatgtttaaggtccctataaataggcgtgtttccaacattagtccctacttatattttatgaaattttttgtccccaa 42817218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 1692588 - 1692671
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||| ||||||| ||||||||||| | |||| ||||| |||||  |||||||||||||| ||||||||||||||||||    
T  1692588 ttaattatgtattaggtctctataaataggcgtgttttcaacagtagtccctacttaaattttattaaatttttggtccccaac 1692671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 39308278 - 39308361
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||||||||||||||||  | |||| |||| ||||||  |||||||||||||| ||||||||||||||||||    
T  39308278 ttaattatgtttaaggtccctataaatagacgtgttttcaaccttagtccctacttaaattttattaaatttttggtccccaac 39308361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 21135022 - 21135103
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccca 316  Q
    ||||||||||||| |||||||||||||||| | |||| |||||||||||   ||||||||||||| ||||||||| ||||||    
T  21135022 ttaattatgtttttggtccctataaataggcgtgttttcaacattagtcccaacttaaattttattaaatttttgatcccca 21135103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 45021964 - 45022047
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||||||||||||||| ||| | |||||| |||||||  | | |||||||||| ||||||||||||||||||    
T  45021964 ttaattatgtttcaggtccctataaatacgtgtgcttccaatattagtcccttcctaaattttattaaatttttggtccccaac 45022047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 35368889 - 35368962
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    ||||||||||||||||| |||||||||||| | |||| ||||||||||   |||||||||||||| ||||||||    
T  35368889 ttaattatgttttaggttcctataaataggcgtgttttcaacattagtacctacttaaattttattaaattttt 35368962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 35370281 - 35370203
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||||   ||| |||| ||||| ||||||||||||||    
T  35370281 ttaattatgttttaggtccctataaataggcgtgttttcaacattagttcctacataaa-tttattaaatttttggtccc 35370203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 35864253 - 35864170
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||| |||||||||||||||| | ||  || ||||||   |||||||||||||| |||||||||||| |||||    
T  35864253 ttaattatgttttagatccctataaataggtgtgcttttaatattagttcctacttaaattttattaaatttttggtcgccaac 35864170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 39310712 - 39310629
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||||||||| |||||||  ||||| |||||||| |   ||||||||||||||  |||||||||||||||||    
T  39310712 ttaattatgtttaaggtccctagaaataggcacgttttcaacattaattcctacttaaattttatttaatttttggtccccaac 39310629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 16478690 - 16478614
Alignment:
Q  242 tgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||   |||||||||| ||||||| ||||||||||  |||||||||||||| ||||| |||||| |||||    
T  16478690 tgttttaggttgttataaataggcgcgtttctaacattagtccctacttaaattttattaaattattggtctccaac 16478614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 14840552 - 14840489
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaatttta 298  Q
    |||||||||||| |||||| || ||||||| ||||||||||||||||||  |||| ||||||||    
T  14840552 ttaattatgtttaaggtccttacaaataggcgcgtttccaacattagtccttactaaaatttta 14840489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 36063996 - 36063934
Alignment:
Q  255 tataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||  |||||||||||||||||  |||||||||||||| ||||||||| ||||||||    
T  36063996 tataaataggcccgtttccaacattagtcc-tacttaaattttattaaatttttgatccccaac 36063934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 35862671 - 35862707
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgttt 271  Q
    |||||||||||||||||||||||||||||| ||||||    
T  35862671 ttaattatgttttaggtccctataaataggcgcgttt 35862707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 32243354 - 32243440
Alignment:
Q  232 ggattaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||| ||||| ||||||||| | | | || ||||||| |||  || ||||||||||| ||||||||  ||||||||    
T  32243354 ggattaattatgtttaaggtctctataaataagcgagctttcaacattggtccctatttaaattttattaaatttttcatccccaac 32243440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 44893535 - 44893608
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    |||||||||||| ||||||||| ||||| | | | |||||||||| ||| ||| | ||||||||| ||||||||    
T  44893535 ttaattatgtttaaggtccctacaaataagcgagcttccaacattggtccatattaaaattttattaaattttt 44893608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 15119434 - 15119351
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  15119434 ttaattatgtttaaggtccctataaataggtgtgtttccaacattagtccctacttaaattttattaaatttttggtccccaac 15119351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 7855482 - 7855399
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||| ||||||||||||||| | |||| |||||||||||  |||||||||||||| ||||||||||||||||||    
T  7855482 ttaattatgttttaagtccctataaataggcgtgttttcaacattagtccctacttaaattttattaaatttttggtccccaac 7855399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 7852250 - 7852329
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    |||||||||||||||||||||||||||||| | |||| |||||||| ||  |||||||||||||| ||||||||||||||    
T  7852250 ttaattatgttttaggtccctataaataggcgtgttttcaacattaatccctacttaaattttattaaatttttggtccc 7852329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 17246674 - 17246591
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||| ||||||||||| | ||||| |||| |||||  |||||||||||||| ||||||||||||||||||    
T  17246674 ttaattatgttttaggtctctataaataggcgtgtttctaacaatagtccctacttaaattttattaaatttttggtccccaac 17246591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 22971595 - 22971678
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| ||||  |||||||||||||| ||||||||  ||||||||    
T  22971595 ttaattatgttttagatccctataaataggcgcgtttccaacatcagtccctacttaaattttattaaattttttatccccaac 22971678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 23816803 - 23816720
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| ||||  |||||||||||||| ||||||||  ||||||||    
T  23816803 ttaattatgttttagatccctataaataggcgcgtttccaacatcagtccctacttaaattttattaaattttttatccccaac 23816720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 5080100 - 5080021
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    ||||||||||||||||||| ||||||||| || |||||||| ||||||   || ||||||||||| |||||||||||||||    
T  5080100 ttaattatgttttaggtcc-tataaatagatgtgtttccaatattagttcctatttaaattttattaaatttttggtcccc 5080021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 22972379 - 22972296
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||| | |||||||||| | |||| ||| |||||||  |||||| ||||||| ||||||||||| ||||||    
T  22972379 ttaattatgttttaggttcttataaataggcgtgttttcaatattagtccctacttatattttattaaatttttggttcccaac 22972296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 23816019 - 23816102
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||| | |||||||||| | |||| ||| |||||||  |||||| ||||||| ||||||||||| ||||||    
T  23816019 ttaattatgttttaggttcttataaataggcgtgttttcaatattagtccctacttatattttattaaatttttggttcccaac 23816102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 3335761 - 3335689
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttt 307  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||| ||  ||| |||||||||| |||||||    
T  3335761 ttaattatgctttaggttcctataaataggcgtgtttccaacattactccctacataaattttattaaatttt 3335689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 21108680 - 21108596
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaaca 319  Q
    |||||||||||| |||| |||| ||||| | | | |||||||||| |||  |||| ||||||||| ||||||||  |||||||||    
T  21108680 ttaattatgtttaaggttcctacaaataagcgagcttccaacattggtccctactaaaattttattaaatttttcatccccaaca 21108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 46043369 - 46043452
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  46043369 ttaattatgttttaggttcctataaatatgcgcgtttccaacattagtccctacttaaattttattaaatttttggtccccaac 46043452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 38198764 - 38198844
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||  || ||||||||||| |||||||||||||||    
T  38198764 ttaattatgttttaggtccctataaataggcgtgtttccaacattagtccctatttaaattttattaaatttttggtcccc 38198844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 38875152 - 38875069
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||||||||||||||| | | | ||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  38875152 ttaattatgtttaaggtccctataaataagcgtgcttccaacattagtctctacttaaattttattaaatttttggtccccaac 38875069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 43830654 - 43830737
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||| ||||||||    
T  43830654 ttaattatgtttaaggcccctataaataggtgcgttttcaacattagtccctacttaaattttattaaatttttgatccccaac 43830737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 45959253 - 45959170
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||| ||||| || |||||    
T  45959253 ttaattatgttttaggtctctataaataggttcgtttccaacattagtctctacttaaattttattaaaattttgatctccaac 45959170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 33624484 - 33624570
Alignment:
Q  232 ggattaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||||||||||||||||||| ||||||  |||||||||   |||||||||||||| ||||||||| ||||||||    
T  33624484 ggattaattatgttttaggtccctataaataggcgcgtttttaacattagttcctacttaaattttattaaatttttgatccccaac 33624570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 43084431 - 43084351
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||||   |||||||||||||| |||||||||||||||    
T  43084431 ttaattatgttttaggtctctataaataggcgtgtttccaacattagttcctacttaaattttattaaatttttggtcccc 43084351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 45957808 - 45957888
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||| |  |||||||||||||| |||||||||||||||    
T  45957808 ttaattatgttttaggtccctataaataggcgtgttttcaacattagcccctacttaaattttattaaatttttggtcccc 45957888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 33625999 - 33625916
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||||||||||||||||||||  | ||||||| |||||||   |||||||||||||| ||||||||||||||||||    
T  33625999 ttaattatgttttaggtccctataaatagacgtgtttccatcattagttcctacttaaattttattaaatttttggtccccaac 33625916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 43832042 - 43831959
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| ||||| ||||||||||| |||||| |||||||||||  |||||||||||||| |||||||| |||||||||    
T  43832042 ttaattatgtttaaggtctctataaataggcgcgttttcaacattagtccctacttaaattttattaaattttttgtccccaac 43831959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 15131922 - 15131838
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaaca 319  Q
    ||||||||||||||||||| ||||||| || | |||| ||||||||||   |||||||||||||| |||||||||||||||||||    
T  15131922 ttaattatgttttaggtccttataaatcggcgtgttttcaacattagttcctacttaaattttattaaatttttggtccccaaca 15131838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 3496773 - 3496690
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||| || ||||||||| |||||| ||||||||| || |||||||||||||| | |||||||||| |||||    
T  3496773 ttaattatgttttaggttccaataaataggcgcgttttcaacattagcctctacttaaattttattatatttttggtctccaac 3496690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 46331959 - 46331883
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtc 312  Q
    |||||||| |||||||||| | |||||||| ||||||||||||||||||  |||||||||||||| ||||||||||||    
T  46331959 ttaattatattttaggtcc-tgtaaataggcgcgtttccaacattagtccctacttaaattttattaaatttttggtc 46331883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 43309709 - 43309630
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    ||||| |||||| ||||||||||||||||| | |||| |||||||| ||| |||||||||||||| ||||||||| ||||    
T  43309709 ttaatcatgtttaaggtccctataaataggcgtgttttcaacattaatctctacttaaattttattaaatttttgatccc 43309630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 43083031 - 43083108
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcc 313  Q
    ||||||||||||||||||| |||||||||  | ||||  ||||||||||| |||||||||||||| |||||||||||||    
T  43083031 ttaattatgttttaggtcc-tataaatagacgtgtttttaacattagtctctacttaaattttattaaatttttggtcc 43083108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 3495361 - 3495440
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    ||||||||||||||||| | |||||||||  ||||||  ||||||||||  |||||||||||||| |||||||||||||||    
T  3495361 ttaattatgttttaggtgcttataaatagacgcgtttt-aacattagtccctacttaaattttattaaatttttggtcccc 3495440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 38200162 - 38200083
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    |||||||||||||| |||| ||||||| ||  | ||| |||||||||||  |||||||||||||| ||||||||||||||    
T  38200162 ttaattatgttttaagtccttataaatgggctcattttcaacattagtcattacttaaattttattaaatttttggtccc 38200083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 43308458 - 43308541
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| |||||| |||||||||  | |||| |||||| ||||   ||||||||||||| ||||||||||||||||||    
T  43308458 ttaattatgtttaaggtccttataaatagacgtgttttcaacatcagtcccaacttaaattttattaaatttttggtccccaac 43308541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 46044887 - 46044808
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    ||||||||||||||||| | |||||||| | | |||| |||||||||||  |||||||||||||| ||||||||| ||||    
T  46044887 ttaattatgttttaggttcttataaataagcgtgttttcaacattagtccctacttaaattttattaaatttttgatccc 46044808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 46330498 - 46330581
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||| ||||| ||| ||| |||||| | ||||||||||||||||  |||||||||||||| ||||||||  ||||||||    
T  46330498 ttaattatgatttagttccatatgaataggcgtgtttccaacattagtccctacttaaattttattaaattttttatccccaac 46330581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 38873884 - 38873946
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaatttt 297  Q
    |||||||||||| ||||||||||||||||| || ||| |||||||||||  ||||||||||||    
T  38873884 ttaattatgtttaaggtccctataaataggcgcattttcaacattagtccctacttaaatttt 38873946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 44168371 - 44168295
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccc 314  Q
    ||||||||||||||| | |||||   ||||||||||| |||||||||||  |||||||||||||| ||||||||| ||||    
T  44168371 ttaattatgttttagattcctat---taggtgcgttttcaacattagtccctacttaaattttattaaatttttgatccc 44168295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 44166845 - 44166918
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    |||||||| |||||||| |  ||||||||| ||||||| ||||||| ||  |||||||||||||| ||||||||    
T  44166845 ttaattatattttaggttctaataaataggcgcgtttctaacattaatccctacttaaattttattaaattttt 44166918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 37107357 - 37107431
Alignment:
Q  234 attaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaattttt 308  Q
    ||||||||||||| ||||||||||||||| | | ||||  |||||| |||  || ||||||||||| ||||||||    
T  37107357 attaattatgtttaaggtccctataaataagcgagtttttaacattggtccctatttaaattttattaaattttt 37107431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 49349 - 49272
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtc 312  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||||||||    
T  49349 ttaattatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttggtc 49272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 314 - 231
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    ||||||||||||||||| || ||||||||| |||||| ||||||||| || |||||||||||||| | |||||||||| |||||    
T  314 ttaattatgttttaggttccaataaataggcgcgttttcaacattagcctctacttaaattttattatatttttggtctccaac 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 10543 - 10463
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtcccc 315  Q
    |||||||||||||||||| ||||||||||  || |||  || |||||||| |||||||||||||| |||||||||||||||    
T  10543 ttaattatgttttaggtctctataaatagacgcatttttaatattagtctctacttaaattttattaaatttttggtcccc 10463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 282614 - 282697
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaac 318  Q
    |||||||||||| | ||||||||||||| | | |||||||||||| |||  || ||||||||||| ||||||||  ||||||||    
T  282614 ttaattatgtttaaagtccctataaataagcgagtttccaacattggtccctatttaaattttattaaatttttcatccccaac 282697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 34675 - 34735
Alignment:
Q  235 ttaattatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaatt 295  Q
    |||||||| ||||||||| ||||||||||||| |||| |||||||| ||  ||||||||||    
T  34675 ttaattatattttaggtctctataaataggtgtgttttcaacattaatccctacttaaatt 34735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 38970 - 38891
Alignment:
Q  238 attatgttttaggtccctataaataggtgcgtttccaacattagtctatacttaaattttatcaaatttttggtccccaa 317  Q
    ||||| ||||||||| |||||||||||   |||| ||||||||||   ||| |||||||||| ||||||||| |||||||    
T  38970 attatattttaggtctctataaataggcatgttttcaacattagttcctacataaattttattaaatttttgatccccaa 38891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University