View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4760_high_13 (Length: 239)
Name: NF4760_high_13
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4760_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1480459 - 1480680
Alignment:
| Q |
1 |
ttaaatcaataatttttatcatatcttatttagtccgatggcgagacttgttgattcaatgctagaaataaacatgtacatgttacaacaactatcttaa |
100 |
Q |
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| T |
1480459 |
ttaaatcaataatttttatcatatcttatttagtccgatggcgagacttgttgattcaatgctagaaataaacatgtacatgttacaacaactatcttaa |
1480558 |
T |
|
| Q |
101 |
ttgtgcattatagaataaaattatgtttgaaacaaaaatgttttaagtttcacccaaaaatttgattgagattaatcaccactagacaaaagtaatactt |
200 |
Q |
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| T |
1480559 |
ttgtgcattatagaataaaattatgtttgaaacaaaaatgttttaagtttcacccaaaaatttgattgagattaatcaccactagacaaaagtaatactt |
1480658 |
T |
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| Q |
201 |
catatcaataacatgattatgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
1480659 |
catatcaataacatgattatgt |
1480680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 1481289 - 1481450
Alignment:
| Q |
2 |
taaatcaataatttttatcatatcttatttagtccgatggcgagacttgttgattcaatgctagaaataaacatgtacatgttacaacaactatcttaat |
101 |
Q |
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||||||||||||| ||||||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||| | ||||||| | ||||||||||| | | |
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| T |
1481289 |
taaatcaataattcttatcatatcttatttaattcgatggcaagacttattgattcaatgttagaaataaacctatacatgtaagaacaactatctcact |
1481388 |
T |
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| Q |
102 |
tgtgcattatagaataaaattatgtttgaaacaaaaatgttttaagtttcacccaaaaatttga |
165 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||||||| |
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| T |
1481389 |
tgtgcattataga--aaaattatgtttgaaacaaaaatattttaagtttcgcccacaaatttga |
1481450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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