View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4760_high_16 (Length: 203)

Name: NF4760_high_16
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4760_high_16
NF4760_high_16
[»] chr2 (23 HSPs)
chr2 (1-62)||(30045613-30045674)
chr2 (1-62)||(30050776-30050837)
chr2 (1-62)||(30141820-30141881)
chr2 (1-62)||(30045796-30045857)
chr2 (1-62)||(30050959-30051020)
chr2 (1-62)||(30142003-30142064)
chr2 (3-62)||(30243412-30243471)
chr2 (1-59)||(30089208-30089266)
chr2 (1-59)||(30125812-30125870)
chr2 (1-62)||(30051141-30051202)
chr2 (1-62)||(30142185-30142246)
chr2 (146-188)||(30051098-30051140)
chr2 (146-188)||(30142142-30142184)
chr2 (146-188)||(30243548-30243590)
chr2 (146-188)||(30045753-30045795)
chr2 (146-188)||(30050916-30050958)
chr2 (146-188)||(30141960-30142002)
chr2 (158-188)||(30045582-30045612)
chr2 (158-188)||(30050745-30050775)
chr2 (158-188)||(30089177-30089207)
chr2 (158-188)||(30125781-30125811)
chr2 (158-188)||(30141789-30141819)
chr2 (158-188)||(30243379-30243409)
[»] chr6 (1 HSPs)
chr6 (1-64)||(34008087-34008150)


Alignment Details
Target: chr2 (Bit Score: 62; Significance: 5e-27; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30045613 - 30045674
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045613 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 30045674  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30050776 - 30050837
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30050776 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 30050837  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30141820 - 30141881
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30141820 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 30141881  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30045796 - 30045857
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30045796 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtacaatat 30045857  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30050959 - 30051020
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30050959 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtacaatat 30051020  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30142003 - 30142064
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30142003 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacagccaagtacaatat 30142064  T

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Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 30243412 - 30243471
Alignment:
Q  3 atcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 62  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30243412 atcaagttttttattaaagacaaaatgaatgtattgaaaaacaacaaccaagtacaatat 30243471  T

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Target: chr2; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30089208 - 30089266
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaa 59  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30089208 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaatcacaaccaagtacaa 30089266  T

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Target: chr2; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30125812 - 30125870
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaa 59  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30125812 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaatcacaaccaagtacaa 30125870  T

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Target: chr2; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30051141 - 30051202
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 62  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||    
T  30051141 tcatcaagttttttattaaaggcaaaatgaatgtagtgaaaaaccacagccaagtacaatat 30051202  T

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Target: chr2; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30142185 - 30142246
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatat 62  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||    
T  30142185 tcatcaagttttttattaaaggcaaaatgaatgtagtgaaaaaccacagccaagtacaatat 30142246  T

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Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 30051098 - 30051140
Alignment:
Q  146 gcaacacaatttggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30051098 gcaacacaatttggtatgaaaataaagaatttgagtacaaatt 30051140  T

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Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 30142142 - 30142184
Alignment:
Q  146 gcaacacaatttggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30142142 gcaacacaatttggtatgaaaataaagaatttgagtacaaatt 30142184  T

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Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 30243548 - 30243590
Alignment:
Q  146 gcaacacaatttggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30243548 gcaacacaatttggtatgaaaataaagaatttgagtacaaatt 30243590  T

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Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 30045753 - 30045795
Alignment:
Q  146 gcaacacaatttggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  30045753 gcaacacaatttcgtatgaaaataaagaatttgagtacaaatt 30045795  T

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Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 30050916 - 30050958
Alignment:
Q  146 gcaacacaatttggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  30050916 gcaacacaatttcgtatgaaaataaagaatttgagtacaaatt 30050958  T

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Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 30141960 - 30142002
Alignment:
Q  146 gcaacacaatttggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  30141960 gcaacacaatttcgtatgaaaataaagaatttgagtacaaatt 30142002  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 30045582 - 30045612
Alignment:
Q  158 ggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||||||||||||||||||||||    
T  30045582 ggtatgaaaataaagaatttgagtacaaatt 30045612  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 30050745 - 30050775
Alignment:
Q  158 ggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||||||||||||||||||||||    
T  30050745 ggtatgaaaataaagaatttgagtacaaatt 30050775  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 30089177 - 30089207
Alignment:
Q  158 ggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||||||||||||||||||||||    
T  30089177 ggtatgaaaataaagaatttgagtacaaatt 30089207  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 30125781 - 30125811
Alignment:
Q  158 ggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||||||||||||||||||||||    
T  30125781 ggtatgaaaataaagaatttgagtacaaatt 30125811  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 30141789 - 30141819
Alignment:
Q  158 ggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||||||||||||||||||||||    
T  30141789 ggtatgaaaataaagaatttgagtacaaatt 30141819  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 30243379 - 30243409
Alignment:
Q  158 ggtatgaaaataaagaatttgagtacaaatt 188  Q
    |||||||||||||||||||||||||||||||    
T  30243379 ggtatgaaaataaagaatttgagtacaaatt 30243409  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34008087 - 34008150
Alignment:
Q  1 tcatcaagttttttattaaagacaaaatgaatgtattgaaaaaccacaaccaagtacaatatat 64  Q
    |||||||||||||||||| |  ||||||||| |||||||||||||||| | |||||||||||||    
T  34008087 tcatcaagttttttattacatgcaaaatgaaggtattgaaaaaccacacctaagtacaatatat 34008150  T

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