View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4760_high_2 (Length: 555)
Name: NF4760_high_2
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4760_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 531
Target Start/End: Complemental strand, 42298330 - 42297825
Alignment:
| Q |
12 |
agagacatgaaagagttaatgacttcaattaattcatatcgaaggagctgcagtggctcctgatgtctgggacccttagagcgaacatggataatggtga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42298330 |
agagacatgaaagagttaatgacttcaattaattcatatcggaggagctgcattagctcctgatgtctgggacccttagagcgaacatggataatggtga |
42298231 |
T |
|
| Q |
112 |
gcaaaacatgaagggataaatgagaaaagacaacattgactttttcacaatggtagagcaaagatttggccaaatttaatgaaaccttctttaagttttt |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42298230 |
gcaaaacatgaaggaataaatgagaaaagacaacattgactttttcataatggtagagcaaagatttggccaaatttaatgaaaccttctttaagttttt |
42298131 |
T |
|
| Q |
212 |
gtcgaccgaatatttgtgcttcatcaaggtatgtcattcttctctgtttgacggcgcaagcacgcatgatgaaactatagtaggtcaaatacgatgatgt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
42298130 |
gtcgaccgaatatttgtgcttcatcaaggtatgtcattcttctctgtttgacggcgcaaacacgcacgatgaaactatagtaggtcaaatacgaggatgt |
42298031 |
T |
|
| Q |
312 |
taagataaccataagatgaaattgggttaggttgggttgaatgaaccaatttcgagagcaacttaatataatcattttctattcgttagtggataatgtc |
411 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42298030 |
taagataaccataagatgaaattg----------ggttgaatgaaccaatttcgagagcaacttaatataatcattttctattcgttagtggataatgtc |
42297941 |
T |
|
| Q |
412 |
ttaaaataatgatatgatnnnnnnnnnnntttcaagaaatgtataaatttacaagaaatagatgcacggtaacaatgttattttattatagttgtttctc |
511 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42297940 |
ttaaaataatgatatgat--aacaaattttttcaaaaaatgtataaatttacaagaa--agatacacggtaacaatgttattttattatagttgtttctc |
42297845 |
T |
|
| Q |
512 |
tcattactagttagtctgta |
531 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42297844 |
tcattactagttagtctgta |
42297825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University