View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4760_high_5 (Length: 303)

Name: NF4760_high_5
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4760_high_5
NF4760_high_5
[»] chr4 (12 HSPs)
chr4 (14-287)||(38145667-38145940)
chr4 (14-253)||(38149509-38149748)
chr4 (166-244)||(36108009-36108087)
chr4 (166-244)||(21482741-21482819)
chr4 (155-243)||(38086358-38086446)
chr4 (155-226)||(36080163-36080234)
chr4 (156-225)||(37954200-37954269)
chr4 (155-243)||(38072848-38072936)
chr4 (168-243)||(38058520-38058595)
chr4 (168-243)||(38061859-38061934)
chr4 (166-232)||(34971558-34971624)
chr4 (166-208)||(36100786-36100828)
[»] chr2 (3 HSPs)
chr2 (14-283)||(11786880-11787149)
chr2 (168-208)||(11803584-11803624)
chr2 (171-223)||(11917650-11917702)
[»] chr6 (1 HSPs)
chr6 (166-244)||(6838770-6838848)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 38145940 - 38145667
Alignment:
Q  14 gagattttcatcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaaactgtcactgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145940 gagattttcatcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaaactgtcactgtt 38145841  T
Q  114 ggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggctt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145840 ggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggctt 38145741  T
Q  214 ttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaactccaagaccatatttt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38145740 ttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaacaccaagaccatatttt 38145667  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 38149748 - 38149509
Alignment:
Q  14 gagattttcatcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaaactgtcactgtt 113  Q
    ||||||||||||||||   |||||||||| ||||||||||| ||||| |||  |  |||||||||||||| | || || || || ||||||||||| |||    
T  38149748 gagattttcatcaatatttggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaaactgtcacagtt 38149649  T
Q  114 ggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggctt 213  Q
      ||| |||||||| |  || ||||||||||| ||||  |  || ||||| || ||||| || |||||||| ||||||||||| || |||||||| ||||    
T  38149648 tttggcacaggaactaatttgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggtcttctcccattgctt 38149549  T
Q  214 ttctgtcaagaatgttacccttcgcatcaacgattcgagc 253  Q
    | ||||||||||| || || || |||||||| ||||||||    
T  38149548 tcctgtcaagaatttttccattagcatcaacaattcgagc 38149509  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 36108087 - 36108009
Alignment:
Q  166 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaac 244  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||||| ||||||||  |||||||    
T  36108087 caccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaac 36108009  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 21482819 - 21482741
Alignment:
Q  166 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaac 244  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| | |||||| ||||| || ||||| ||| |||||||    
T  21482819 caccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaaggatattaccattcacatcaac 21482741  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 38086446 - 38086358
Alignment:
Q  155 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 243  Q
    |||||| ||| | |||||||||||||| ||||||||||| | |||||| ||||| |||| |||||||||||   |||||||| ||||||    
T  38086446 accaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaa 38086358  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 36080234 - 36080163
Alignment:
Q  155 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaat 226  Q
    |||||| ||| |||| |||||||| |||||||||||||||| ||| |||||||| | |||||| ||||||||    
T  36080234 accaaaacttgcaccaccaccaccccttatagcccaaaataaatcttctcccattgattttctatcaagaat 36080163  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 37954269 - 37954200
Alignment:
Q  156 ccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaa 225  Q
    ||||||||| | |||||||| ||||| ||||||||||| |||||||| ||||| | || |||||||||||    
T  37954269 ccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaa 37954200  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 38072936 - 38072848
Alignment:
Q  155 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 243  Q
    |||||| ||| | |||||||||||||| ||||||||||| | ||| || ||||| |||| |||||||||||   |||||||| ||||||    
T  38072936 accaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaa 38072848  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 38058595 - 38058520
Alignment:
Q  168 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 243  Q
    |||||||||||||| ||||||||||| | ||| || ||||| |||| |||||||||||   |||||||| ||||||    
T  38058595 cctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaa 38058520  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 38061859 - 38061934
Alignment:
Q  168 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 243  Q
    |||||||| ||||| ||||||||||| | |||||| ||||| |||| |||||||||||   |||||||| ||||||    
T  38061859 cctccacctcctctaatagcccaaaaaaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaa 38061934  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 34971558 - 34971624
Alignment:
Q  166 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacc 232  Q
    |||| ||||||||||| ||||||||||| ||||| |||||||| |  ||||| |||||||| |||||    
T  34971558 caccaccaccacctctgatagcccaaaagagatcttctcccattgactttctatcaagaatattacc 34971624  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 36100828 - 36100786
Alignment:
Q  166 cacctccaccacctcttatagcccaaaatagatcctctcccat 208  Q
    |||| |||||||| |||||||||||||||||||| ||||||||    
T  36100828 caccaccaccaccccttatagcccaaaatagatcttctcccat 36100786  T

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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 11786880 - 11787149
Alignment:
Q  14 gagattttcatcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaaactgtcactgtt 113  Q
    ||||||||||||||||   |||||||||||||||||| |||||| ||| ||  | ||| |||||||||   |||| || || |||||||| ||||| |||    
T  11786880 gagattttcatcaatagttggtgctacttcttgccatttatgaacaatcttacttgcatcttgttctaagcttttggtaacggtaaaaaccgtcacggtt 11786979  T
Q  114 ggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggctt 213  Q
      ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |  ||||| ||||| | ||    
T  11786980 tttggaacaggaacaagttttatcttccaccaaagaagaataccaaaacttccacctccaccacctctaatagcccaaaagaattcctcccccatagatt 11787079  T
Q  214 ttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattatcaactccaagaccata 283  Q
    |||| || ||||| || || |||||||| || |||   || || |  ||||||||| |||||||||||||    
T  11787080 ttctatcgagaatatttccgttcgcatcgactatttttgcgtcgagaacattatcagctccaagaccata 11787149  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 11803584 - 11803624
Alignment:
Q  168 cctccaccacctcttatagcccaaaatagatcctctcccat 208  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  11803584 cctccacctcctcttatagcccaaaatagatcctcacccat 11803624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 11917702 - 11917650
Alignment:
Q  171 ccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaag 223  Q
    ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||    
T  11917702 ccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaag 11917650  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 6838848 - 6838770
Alignment:
Q  166 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaac 244  Q
    |||| |||||||||||||| |||||||| ||||| |||||||| | |||||| |||||||| ||||||||  |||||||    
T  6838848 caccaccaccacctcttatggcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaac 6838770  T

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