View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4760_high_7 (Length: 265)

Name: NF4760_high_7
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4760_high_7
NF4760_high_7
[»] chr2 (8 HSPs)
chr2 (21-252)||(10339773-10339996)
chr2 (31-91)||(42182906-42182966)
chr2 (33-91)||(28898140-28898198)
chr2 (42-91)||(4964776-4964825)
chr2 (31-91)||(37228515-37228576)
chr2 (31-91)||(1107055-1107115)
chr2 (32-91)||(45554585-45554644)
chr2 (147-180)||(10346218-10346251)
[»] chr6 (3 HSPs)
chr6 (31-91)||(35128826-35128886)
chr6 (33-90)||(373418-373475)
chr6 (31-91)||(19090318-19090378)
[»] chr1 (13 HSPs)
chr1 (31-91)||(11135756-11135816)
chr1 (30-91)||(14094104-14094165)
chr1 (31-91)||(32848686-32848746)
chr1 (31-91)||(11430458-11430518)
chr1 (31-91)||(41918012-41918072)
chr1 (32-91)||(15523228-15523287)
chr1 (32-91)||(15531222-15531281)
chr1 (32-91)||(19101704-19101763)
chr1 (32-91)||(22540386-22540445)
chr1 (31-90)||(41095713-41095772)
chr1 (31-81)||(50773125-50773175)
chr1 (30-91)||(28109884-28109945)
chr1 (31-91)||(44739135-44739195)
[»] chr7 (4 HSPs)
chr7 (21-102)||(26703529-26703613)
chr7 (31-102)||(22786168-22786242)
chr7 (33-91)||(11824090-11824148)
chr7 (31-91)||(13919797-13919857)
[»] chr4 (9 HSPs)
chr4 (32-92)||(8108974-8109034)
chr4 (147-188)||(26573426-26573467)
chr4 (31-91)||(42862524-42862584)
chr4 (33-80)||(40812056-40812103)
chr4 (31-81)||(39016779-39016829)
chr4 (31-81)||(51206159-51206209)
chr4 (31-91)||(2187916-2187976)
chr4 (32-88)||(20454558-20454614)
chr4 (31-91)||(47237844-47237904)
[»] chr5 (5 HSPs)
chr5 (31-81)||(4959394-4959444)
chr5 (31-81)||(40971467-40971517)
chr5 (31-91)||(40971556-40971616)
chr5 (31-91)||(42224694-42224754)
chr5 (43-91)||(32050413-32050461)
[»] chr8 (3 HSPs)
chr8 (31-91)||(35689497-35689557)
chr8 (44-102)||(43026321-43026382)
chr8 (42-87)||(45246462-45246507)
[»] chr3 (5 HSPs)
chr3 (31-91)||(37600233-37600293)
chr3 (31-91)||(54140996-54141056)
chr3 (32-91)||(20791314-20791373)
chr3 (32-91)||(28529271-28529330)
chr3 (31-91)||(46237149-46237209)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 10339773 - 10339996
Alignment:
Q  21 ctagcaacaatcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtc---ccactttatgtgggtaccagagagagtgct 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||    
T  10339773 ctagcaacaatcttttgaacactctctctagcactcactattttattggggaaaatcaatgaatgtcccaccactttatgtgggtaccacagagagtgct 10339872  T
Q  118 cnnnnnnntgtgtagctagcattctcctcaacgaagcattacccatcatagttgcaattcaattcaaagtattatcacagtactgtcacagtatcctcgc 217  Q
    |       |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||           ||||||| |||| ||    
T  10339873 caaaaaaatgtgtagctagcattctcctcaacgaagcattactcatcatagttgcaattcaactcaaagtatta-----------tcacagtgtccttgc 10339961  T
Q  218 agttactcatactaatgcttatcacagtattatct 252  Q
    |||||||||||||||||||||||||||||||||||    
T  10339962 agttactcatactaatgcttatcacagtattatct 10339996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 42182906 - 42182966
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | |||||||||||||||||| ||||||||||  ||||||||| |||||||||    
T  42182906 tcttttgagcactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccac 42182966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 28898198 - 28898140
Alignment:
Q  33 ttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||| | |||||||||||||||||| ||||||||||  ||||||||| |||||||||    
T  28898198 ttttgagcactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccac 28898140  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 4964825 - 4964776
Alignment:
Q  42 ctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||||||||||||| ||||||||||  ||||||||| |||||||||    
T  4964825 ctctctctagcactcacttttttattgggtgaaatcaatgtatgtcccac 4964776  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 37228515 - 37228576
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggg-gaaaatcaatgaatgtcccac 91  Q
    |||||||| | |||||||||||||||||| |||||||||| |||||| |||| |||||||||    
T  37228515 tcttttgagcactctctctagcactcactcttttattgggtgaaaattaatgtatgtcccac 37228576  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 1107055 - 1107115
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | ||||||||||||| |||| ||||||||||  ||||||||| |||||||||    
T  1107055 tcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgtatgtcccac 1107115  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 45554585 - 45554644
Alignment:
Q  32 cttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    ||||| ||| |||||||||||||||||| |||||||||   ||||||||| |||||||||    
T  45554585 cttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtcccac 45554644  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 10346218 - 10346251
Alignment:
Q  147 aacgaagcattacccatcatagttgcaattcaat 180  Q
    ||||||||||||||||||| ||||||||||||||    
T  10346218 aacgaagcattacccatcacagttgcaattcaat 10346251  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 35128886 - 35128826
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||||| |||||||||||| ||||| |||||||||| |||||||||| |||||||||    
T  35128886 tcttttgaacactctctctagcagtcactcttttattgggtaaaatcaatgtatgtcccac 35128826  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 373418 - 373475
Alignment:
Q  33 ttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtccca 90  Q
    |||||| | ||||||||||||| |||| |||||||||| |||||||||| ||||||||    
T  373418 ttttgagcactctctctagcacccacttttttattgggtaaaatcaatgtatgtccca 373475  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 19090378 - 19090318
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | ||||||||||||| |||| ||||||||||  ||||||||| |||||||||    
T  19090378 tcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgtatgtcccac 19090318  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 11135756 - 11135816
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | |||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  11135756 tcttttgagcactctctctagcactcactattttattgggtgaaatcaatgtatgtcccac 11135816  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 14094165 - 14094104
Alignment:
Q  30 atcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    ||||||||||| ||||||| |||||||||| ||||||||||  ||||||||| |||||||||    
T  14094165 atcttttgaacactctctccagcactcacttttttattgggtgaaatcaatgtatgtcccac 14094104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 32848746 - 32848686
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||||| |||||||||||||||||| ||||||||||  |||||| || |||||||||    
T  32848746 tcttttgaacactctctctagcactcactcttttattgggtgaaatcattgtatgtcccac 32848686  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 11430458 - 11430518
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | |||| ||||||||||||| ||||||||||  ||||||||| |||||||||    
T  11430458 tcttttgagcactctttctagcactcactcttttattgggtgaaatcaatgtatgtcccac 11430518  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 41918012 - 41918072
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | | |||||||||||||||| ||||||||||  ||||||||| |||||||||    
T  41918012 tcttttgagcaccctctctagcactcactcttttattgggtgaaatcaatgtatgtcccac 41918072  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 15523228 - 15523287
Alignment:
Q  32 cttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||| || |||||| |||||||||||||||||||||   ||||||||| |||||||||    
T  15523228 cttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtcccac 15523287  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 15531222 - 15531281
Alignment:
Q  32 cttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||| || |||||| |||||||||||||||||||||   ||||||||| |||||||||    
T  15531222 cttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtcccac 15531281  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 19101763 - 19101704
Alignment:
Q  32 cttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||| || |||||| |||||||||||||||||||||   ||||||||| |||||||||    
T  19101763 cttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtcccac 19101704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 22540386 - 22540445
Alignment:
Q  32 cttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||| || |||||| |||||||||||||||||||||   ||||||||| |||||||||    
T  22540386 cttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtcccac 22540445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 41095772 - 41095713
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtccca 90  Q
    |||||||| | ||||||||||||||||||  |||||||||  ||||||||| ||||||||    
T  41095772 tcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgtatgtccca 41095713  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 50773125 - 50773175
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatg 81  Q
    |||||||||| |||||||||||||||| | |||||||||| ||||| ||||    
T  50773125 tcttttgaacactctctctagcactcattcttttattgggtaaaattaatg 50773175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 28109884 - 28109945
Alignment:
Q  30 atcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    ||||||||| | || ||||||||||||||| ||||||||||  ||||||||| |||| ||||    
T  28109884 atcttttgagcactttctctagcactcacttttttattgggtgaaatcaatgcatgttccac 28109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 44739135 - 44739195
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||||| |||||||||||||||||| |||| ||| |  |||| |||| |||||||||    
T  44739135 tcttttgaacactctctctagcactcactcttttcttgagtgaaattaatgtatgtcccac 44739195  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 26703613 - 26703529
Alignment:
Q  21 ctagcaacaatcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtc---ccactttatgtgggt 102  Q
    ||||||||| |||||||| |  ||||||||||||||||| ||||||||||  ||||||||| |||||   |||||||||||||||    
T  26703613 ctagcaacactcttttgagcattctctctagcactcactcttttattgggtgaaatcaatgtatgtctcaccactttatgtgggt 26703529  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 22786168 - 22786242
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtc---ccactttatgtgggt 102  Q
    |||||||| | |||||||||||||||||| ||||||| ||  ||||||||| |||||   |||||||||||||||    
T  22786168 tcttttgagcactctctctagcactcacttttttattaggtgaaatcaatgtatgtctcaccactttatgtgggt 22786242  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 11824090 - 11824148
Alignment:
Q  33 ttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||| ||| |||||||||||||||||| |||||||||   ||||||||| |||||||||    
T  11824090 ttttcaacgctctctctagcactcactcttttattggatgaaatcaatgtatgtcccac 11824148  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 13919797 - 13919857
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | ||||||||||||||| ||  |||||||||  ||||||||| |||||||||    
T  13919797 tcttttgagcactctctctagcactcgctcatttattgggtgaaatcaatgtatgtcccac 13919857  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 8108974 - 8109034
Alignment:
Q  32 cttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccact 92  Q
    ||||| ||| |||||||||||||||||| ||||||||||  ||||||||| ||||||||||    
T  8108974 cttttcaacactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccact 8109034  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 26573426 - 26573467
Alignment:
Q  147 aacgaagcattacccatcatagttgcaattcaattcaaagta 188  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  26573426 aacgaagcattacccatcacagttgcaattcaactcaaagta 26573467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 42862584 - 42862524
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | || ||||||||||||||| ||||||||||  ||||||||| |||||||||    
T  42862584 tcttttgagcactttctctagcactcacttttttattgggtgaaatcaatgtatgtcccac 42862524  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 40812056 - 40812103
Alignment:
Q  33 ttttgaaccctctctctagcactcactattttattggggaaaatcaat 80  Q
    |||||||| |||||||||||||||||| ||||||||||  ||||||||    
T  40812056 ttttgaacactctctctagcactcactcttttattgggtgaaatcaat 40812103  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 39016829 - 39016779
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatg 81  Q
    |||||||||| |||||||||||||| ||| ||||||| || ||||||||||    
T  39016829 tcttttgaacactctctctagcacttactcttttattaggtaaaatcaatg 39016779  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 51206209 - 51206159
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatg 81  Q
    |||||||| | |||||||||||||||||| ||||||||||  |||||||||    
T  51206209 tcttttgagcactctctctagcactcactcttttattgggtgaaatcaatg 51206159  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 2187976 - 2187916
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | |||||||||||  || || ||||||||||  |||||||||||||||||||    
T  2187976 tcttttgagcactctctctagctttcgctcttttattgggtgaaatcaatgaatgtcccac 2187916  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 20454558 - 20454614
Alignment:
Q  32 cttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcc 88  Q
    ||||| ||| |||||||||||||||||| ||||||| |  |||||||||| ||||||    
T  20454558 cttttcaacactctctctagcactcactcttttattagataaaatcaatgtatgtcc 20454614  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 47237904 - 47237844
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||||| |||||||||||| ||||| |||||||||   ||||||||  |||||||||    
T  47237904 tcttttgaacactctctctagcattcactcttttattggatgaaatcaatatatgtcccac 47237844  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 4959444 - 4959394
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatg 81  Q
    |||||||| | |||||||||||||||||| ||||||||||| |||||||||    
T  4959444 tcttttgagcactctctctagcactcactcttttattgggggaaatcaatg 4959394  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 40971467 - 40971517
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatg 81  Q
    |||||||||| |||| |||| ||||||||||||||||||| ||||||||||    
T  40971467 tcttttgaacactctatctaacactcactattttattgggtaaaatcaatg 40971517  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 40971616 - 40971556
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | |||||||||||||||||| |||||||| |  ||||||||| |||||||||    
T  40971616 tcttttgagcactctctctagcactcactcttttattgagtgaaatcaatgtatgtcccac 40971556  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 42224754 - 42224694
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | |||||||||||||||||| ||||||| ||  ||||||||| |||||||||    
T  42224754 tcttttgagcactctctctagcactcactcttttattaggtgaaatcaatgtatgtcccac 42224694  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 32050461 - 32050413
Alignment:
Q  43 tctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    ||||||||||||||||| ||||||||||  ||||||||| |||| ||||    
T  32050461 tctctctagcactcacttttttattgggtgaaatcaatgtatgttccac 32050413  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 35689497 - 35689557
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | |||||||||||||||||| |||||||||   ||||||||| |||||||||    
T  35689497 tcttttgagcactctctctagcactcacttttttattggatgaaatcaatgtatgtcccac 35689557  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 43026321 - 43026382
Alignment:
Q  44 ctctctagcactcactattttattggggaaaatcaatgaatgtc---ccactttatgtgggt 102  Q
    |||||||||||||||| ||||||| || |||||||||| |||||   |||||||||||||||    
T  43026321 ctctctagcactcacttttttattaggtaaaatcaatgtatgtcctgccactttatgtgggt 43026382  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 45246462 - 45246507
Alignment:
Q  42 ctctctctagcactcactattttattggggaaaatcaatgaatgtc 87  Q
    |||||| |||||||||||||||||||||  |||||||||| |||||    
T  45246462 ctctctttagcactcactattttattggataaaatcaatgtatgtc 45246507  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 37600293 - 37600233
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | ||||||||||||| |||| ||||||||||  ||||||||| |||||||||    
T  37600293 tcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgtatgtcccac 37600233  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 54141056 - 54140996
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | ||||||||||||||||||  |||||||||  ||||||||| |||||||||    
T  54141056 tcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgtatgtcccac 54140996  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 20791314 - 20791373
Alignment:
Q  32 cttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||| || |||||| |||||||||||||||||||||   ||||||||| |||||||||    
T  20791314 cttttgcacactctctttagcactcactattttattggatgaaatcaatgtatgtcccac 20791373  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 28529271 - 28529330
Alignment:
Q  32 cttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    ||||| ||| |||||||||||||||||| |||||||||   ||||||||| |||||||||    
T  28529271 cttttcaacactctctctagcactcactcttttattggatgaaatcaatgtatgtcccac 28529330  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 46237209 - 46237149
Alignment:
Q  31 tcttttgaaccctctctctagcactcactattttattggggaaaatcaatgaatgtcccac 91  Q
    |||||||| | |||||||||||| ||||| |||||||||   ||||||||| |||||||||    
T  46237209 tcttttgagcactctctctagcaatcactcttttattggatgaaatcaatgtatgtcccac 46237149  T

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