View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4760_low_11 (Length: 250)
Name: NF4760_low_11
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4760_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 3182391 - 3182630
Alignment:
| Q |
11 |
cagagatattatatatgagtactttatagaaaaaataattgatgttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtag |
110 |
Q |
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| T |
3182391 |
cagagatattatatatgagtactatatagaaaaaataattgatgttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtag |
3182490 |
T |
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| Q |
111 |
ttaaaatatgtggttaattacgttttgttgatagttactagatataataagggnnnnnnncacatcacccatacacggacataattaatcatgattttga |
210 |
Q |
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| T |
3182491 |
ttaaaatatgtggctaattacattttgttgatagttactagatataataagggaaaaaaacacatcacccatacacgaagataattaatcatgattttga |
3182590 |
T |
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| Q |
211 |
atgtctattattaatcataatttttaagtgttgatcaaat |
250 |
Q |
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| T |
3182591 |
atgtctattattaatcataatttttaagtgttgatcaaat |
3182630 |
T |
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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 7712431 - 7712348
Alignment:
| Q |
50 |
tgatgttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggttaattacgt |
133 |
Q |
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| T |
7712431 |
tgatattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacatagttcaaatatgtggttaattacgt |
7712348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 37494707 - 37494790
Alignment:
| Q |
50 |
tgatgttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggttaattacgtt |
134 |
Q |
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| T |
37494707 |
tgatattttgatacaaaa-tttggcaacaaatttcgataacaatttggatggttaatgcagttcaaatatgtgattaattacgtt |
37494790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 29858340 - 29858437
Alignment:
| Q |
50 |
tgatgttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggttaattacgttttgttgatagtta |
147 |
Q |
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| T |
29858340 |
tgattttttgaaacaaaaatttgacatcaaatttcgacgtcaatttagaaggttaacataattcaaatatgtggtttgttaagttccgttgatagtta |
29858437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 41194733 - 41194812
Alignment:
| Q |
55 |
ttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggttaattacgtt |
134 |
Q |
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| T |
41194733 |
ttttgatatacaaatttgacaataaatttcgaaaacaatttgtatggtaaacgcagttcaaatatgtggttcattacgtt |
41194812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 17843915 - 17843952
Alignment:
| Q |
97 |
gatggttaaggtagttaaaatatgtggttaattacgtt |
134 |
Q |
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| T |
17843915 |
gatggttaacgtagtttaaatatgtggttaattacgtt |
17843952 |
T |
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