View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4760_low_13 (Length: 245)
Name: NF4760_low_13
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4760_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6242378 - 6242608
Alignment:
| Q |
1 |
caataaaaagtaaaactgaaaatcacatataaaggtcaggtcatatcctcaccttataatcggtagacgcaagttattctcacgcctcttttttcaagtc |
100 |
Q |
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|||||||||||||||| |||||||| | |||||| || ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |
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| T |
6242378 |
caataaaaagtaaaacagaaaatcaaagttaaaggacatgtcatatcctcaccttataattggtagacacaagtaattctcacgcctcttttttcaagtc |
6242477 |
T |
|
| Q |
101 |
tcatgttttctgggaacctgaaat---cacagagtcacaatattaagagaccccgaaaaagggatacaaagtcacaagaacaacaaagagaggattatat |
197 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
6242478 |
tcatgttttctgggaacctgaaattaatacagagtcacaatattaagagaccccgaaaaagggatacaaagtcacaagaataacaaagagaagattatat |
6242577 |
T |
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| Q |
198 |
ggtgaattaaattaaaaagaattacatcatg |
228 |
Q |
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||||| |||||||||||| |||||||||||| |
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| T |
6242578 |
ggtgacttaaattaaaaacaattacatcatg |
6242608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6256285 - 6256507
Alignment:
| Q |
1 |
caataaaaagtaaaactgaaaatcacatataaaggtcaggtcatatcctcaccttataatcggtagacgcaagttattctcacgcctcttttttcaagtc |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
6256285 |
caataaaaagtaaaactgaaaatcacagttaa-----aggtcatatcctcaccttataattggtagacgcaagttattctcaagcctcttttttcaagtc |
6256379 |
T |
|
| Q |
101 |
tcatgttttctgggaacctgaaatcacagagtcac---aatatt-aagagaccccgaaaaagggatacaaagtcacaagaacaacaaagagaggattata |
196 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||| |||||| | ||||||||||||||||| ||||||||| |||||||||| ||||||| |
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| T |
6256380 |
tcatgttttctgggaacctgaaatcacaaagtcacaagaatattaaagagaactcgaaaaagggatacaaaatcacaagaataacaaagagaagattata |
6256479 |
T |
|
| Q |
197 |
tggtgaattaaattaaaaagaattacat |
224 |
Q |
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|||||||||| ||||||||||||||||| |
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| T |
6256480 |
tggtgaattatattaaaaagaattacat |
6256507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6165971 - 6166184
Alignment:
| Q |
1 |
caataaaaagtaaaactgaaaatcacatataaaggtcaggtcatatcctcaccttataatcggtagacgcaagttattctcacgcctcttttttcaagtc |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| ||| || ||||| |||||||||||||||||||| |
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| T |
6165971 |
caataaaaagtaaaactgaaaatcacagttaaagttgaggtcatatcctcaccttataattggttgaaacaagtaattctcacgcctcttttttcc---- |
6166066 |
T |
|
| Q |
101 |
tcatgttttctgggaacctgaaatcacagagtcacaa---tattaagagaccccgaaaaagggatacaaagtcacaagaacaacaaagagaggattatat |
197 |
Q |
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||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
6166067 |
-----------gggaacctgaaatca--gagtcacaagaatattaagagaccccaaaaaagggatacaaagtcacaagaataacaaagagaagattatat |
6166153 |
T |
|
| Q |
198 |
ggtgaattaaattaaaaagaattacatcatg |
228 |
Q |
| |
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||||||| ||||||||||||||||||||||| |
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| T |
6166154 |
ggtgaatgaaattaaaaagaattacatcatg |
6166184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 6235234 - 6235326
Alignment:
| Q |
136 |
aatattaagagaccccgaaaaagggatacaaagtcacaagaacaacaaagagaggattatatggtgaattaaattaaaaagaattacatcatg |
228 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| || ||||||| ||| ||||||||||||||||||| ||||||||||||||| |
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| T |
6235234 |
aatattaagagaccccgaaaaagcaatacaaagtcacaagaataagaaagagaagataatatggtgaattaaattaagaagaattacatcatg |
6235326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 6897311 - 6897370
Alignment:
| Q |
136 |
aatattaa-gagaccccgaaaaagggatacaaagtcacaagaacaacaaagagaggatta |
194 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||||| |||| ||||| ||||| |
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| T |
6897311 |
aatattaatgagaccccaaaaaagggatacaaagtcacaagaataacatagagaagatta |
6897370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 6262957 - 6263021
Alignment:
| Q |
154 |
aaaagggatacaaagtcacaagaacaacaaagagaggattatatggtgaattaaattaaaaagaattaca |
223 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||| |
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| T |
6262957 |
aaaatggatacaaagtcaaaagaataacaaagtg-----tatatggtgaattaaattaaaaagaattaca |
6263021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 6914307 - 6914363
Alignment:
| Q |
167 |
agtcacaagaacaacaaagagaggattatatggtgaattaaattaaaaagaattaca |
223 |
Q |
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||||||||||| ||| |||| ||||||||| |||||||| |||||||||||||||| |
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| T |
6914307 |
agtcacaagaataacgaagatgggattatatagtgaattatattaaaaagaattaca |
6914363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 6594155 - 6594110
Alignment:
| Q |
142 |
aagagaccccgaaaaagggatacaaagtcacaagaacaacaaagag |
187 |
Q |
| |
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||||||||| ||||||||||||||||||||| ||| ||||||||| |
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| T |
6594155 |
aagagacccaaaaaaagggatacaaagtcacaggaataacaaagag |
6594110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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