View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4760_low_16 (Length: 226)
Name: NF4760_low_16
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4760_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 41 - 211
Target Start/End: Original strand, 56472872 - 56473030
Alignment:
| Q |
41 |
aatggatggaaaataagggttaattagttaacggagagagaagctacctttgtgaaaaaatgtcaaccattcgactcttctcattaatctggagttcggt |
140 |
Q |
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| T |
56472872 |
aatggatggaaaataagggttaattagttaacggagagagaagctacctttgtgaaaaaatgtcgaccattccattcttctcattaa------------t |
56472959 |
T |
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| Q |
141 |
cgtgaggtaagtataacatgatcaaaaattgttttatctagcaattgaactcagttctctcgaaccatttg |
211 |
Q |
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| T |
56472960 |
tgtgaggtaagtataacatgatcaaaaattgttttatctagcaattgaactcagttctctcgaacaatttg |
56473030 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 41852053 - 41852098
Alignment:
| Q |
125 |
taatctggagttcggtcgtgaggtaagtataacatgatcaaaaatt |
170 |
Q |
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| T |
41852053 |
taatctggagttcggccgtgaggtaagtatagcatgaccaagaatt |
41852098 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 37805075 - 37805115
Alignment:
| Q |
133 |
agttcggtcgtgaggtaagtataacatgatcaaaaattgtt |
173 |
Q |
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| T |
37805075 |
agttcggtcgtgaggtaaggataacatggccaaaaattgtt |
37805115 |
T |
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