View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4760_low_4 (Length: 414)
Name: NF4760_low_4
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4760_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 31610661 - 31610283
Alignment:
| Q |
17 |
atgaaccttaaggccaatca-gatcatcattttgaatacattatttttgtttgtgatattattttgcttcaaaatttgactgaaatttaattcctattct |
115 |
Q |
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| T |
31610661 |
atgaaccttaaggccaatcaagatcatcattttgaatacattctttttgtttgtgatattattttgcttcaaaatttgactgaaatttgattcctattct |
31610562 |
T |
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| Q |
116 |
tattctggatttaggtgtttcagaattttgttttcgaagcaagatgatcttatttatatcattatggtatgatataactatgatagtaggattctggttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31610561 |
tattctggatttaggtgtttcagaattttgttttcgaagcaagatgatcttatttatatcattatggtatgatataactatgatagtaggattctggctt |
31610462 |
T |
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| Q |
216 |
tttactgatgcttttggttagatcttggttacgagtatctgttatggcttataggcggcatagactacactctgatgatagtccatagttttgatgtacg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
31610461 |
tttactgatgcttttggttagatcttggttacgagtatctgttatggcttataggcggcatagactacgctctgatgatagtccatagttttgatgtatg |
31610362 |
T |
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| Q |
316 |
tagagcattgatgcactgataataattgcttaattatcaaaaaacaatatcgcagaagccattatacttttttggtgtt |
394 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31610361 |
tagagcgttgatgcactgataataattgcttaattatcaaaaaacaatatcgcagaagccattatacttttttggtgtt |
31610283 |
T |
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