View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4760_low_6 (Length: 279)

Name: NF4760_low_6
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4760_low_6
NF4760_low_6
[»] chr4 (3 HSPs)
chr4 (139-196)||(29298553-29298610)
chr4 (46-75)||(53611241-53611270)
chr4 (209-266)||(53611370-53611429)
[»] chr6 (2 HSPs)
chr6 (205-261)||(34486393-34486451)
chr6 (205-266)||(34391107-34391171)
[»] chr2 (1 HSPs)
chr2 (46-75)||(28027966-28027995)
[»] chr1 (1 HSPs)
chr1 (46-75)||(31477967-31477996)


Alignment Details
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 29298610 - 29298553
Alignment:
Q  139 tgtacagcaagtaactcaacttagtctataagtaattgttttttattcagttgatata 196  Q
    |||| ||||||||||||||||||| ||||||||| ||||||| |||||| ||||||||    
T  29298610 tgtagagcaagtaactcaacttagcctataagtacttgttttgtattcaattgatata 29298553  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 53611241 - 53611270
Alignment:
Q  46 tgttagttagttgtggataaatccaactat 75  Q
    ||||||||||||||||||||||||||||||    
T  53611241 tgttagttagttgtggataaatccaactat 53611270  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 53611370 - 53611429
Alignment:
Q  209 cactcatatctctcacatttaacaata--gagtttcatcattcctttgtagtttcatctc 266  Q
    ||||||||||||||| ||| || ||||  |||||| ||||||||||||||||||| ||||    
T  53611370 cactcatatctctcaaattcaataataaagagttttatcattcctttgtagtttcctctc 53611429  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 34486451 - 34486393
Alignment:
Q  205 atatcactcatatctctcacatttaacaat--agagtttcatcattcctttgtagtttc 261  Q
    |||||||||||||||||||||||||| |||  ||||||| ||||||| |||||||||||    
T  34486451 atatcactcatatctctcacatttaataataaagagttttatcattcttttgtagtttc 34486393  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 34391107 - 34391171
Alignment:
Q  205 atatcactcatatctctcacatttaacaatagag---tttcatcattcctttgtagtttcatctc 266  Q
    ||||||||||||||||||||||| || |||| ||   ||| ||||||||||||||||||| ||||    
T  34391107 atatcactcatatctctcacattcaataataaagtgtttttatcattcctttgtagtttcctctc 34391171  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 28027966 - 28027995
Alignment:
Q  46 tgttagttagttgtggataaatccaactat 75  Q
    ||||||||||||||||||||||||||||||    
T  28027966 tgttagttagttgtggataaatccaactat 28027995  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Original strand, 31477967 - 31477996
Alignment:
Q  46 tgttagttagttgtggataaatccaactat 75  Q
    ||||||||||||||||||||||||||||||    
T  31477967 tgttagttagttgtggataaatccaactat 31477996  T

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