View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4760_low_7 (Length: 275)
Name: NF4760_low_7
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4760_low_7 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 6242282 - 6242212
Alignment:
| Q |
3 |
ttatgccactttgttatcagtgaaatttggtgttttataatcatagttgaaccatgatttaatcaaatttc |
73 |
Q |
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| T |
6242282 |
ttatgccactttgttatcagtgaaatttggtgttttttaatcatagttgaaccatgatttaatcaaatttc |
6242212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 6234491 - 6234381
Alignment:
| Q |
122 |
gtcttgatagcaattagatatannnnnnngaacagaaaatagtatggggaatatattcaatattaaatagcaagtattagtactccttgtatacacctgc |
221 |
Q |
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| T |
6234491 |
gtcttgatagcaattagatatattttttttaacagaaatcagtatggagaatatattcaatattaaatagcaagtattagtactccttctatacaccttc |
6234392 |
T |
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| Q |
222 |
aactagcatgc |
232 |
Q |
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| T |
6234391 |
aaccagcatgc |
6234381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 6235115 - 6235048
Alignment:
| Q |
6 |
tgccactttgttatcagtgaaatttggtgttttataatcatagttgaaccatgatttaatcaaatttc |
73 |
Q |
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| T |
6235115 |
tgccactttgttatcagtgaaatttggtattttctaatcatagttgaaccatgatttaatcaaatttc |
6235048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 6165921 - 6165853
Alignment:
| Q |
5 |
atgccactttgttatcagtgaaatttggtgttttataatcatagttgaaccatgatttaatcaaatttc |
73 |
Q |
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| T |
6165921 |
atgccactttgttatcagtgaaatttggtgttttctaatcatagttggacaatgatttaatcaaatttc |
6165853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 6879603 - 6879541
Alignment:
| Q |
9 |
cactttgttatcagtgaaatttggtgttttataatcatagttgaaccatgatttaatcaaatt |
71 |
Q |
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| T |
6879603 |
cactttgttatcagtgaaatttggtgttttctaatcatagtcggaccatgttttaagcaaatt |
6879541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 6412425 - 6412486
Alignment:
| Q |
152 |
aacagaaaatagtatggggaatatattcaatattaaatagcaagtattagtactccttgtat |
213 |
Q |
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| T |
6412425 |
aacagaaaacagtatggacaatatattcaatattatatagcaagtatgagtacaccttgtat |
6412486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 7747846 - 7747778
Alignment:
| Q |
151 |
gaacagaaaatagtatggggaatatattcaatattaaatagcaagtattagtactccttgtatacacct |
219 |
Q |
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| T |
7747846 |
gaacagaaaacagcatggacaatatattcaatattagatagcaagtatgagtactctttgtatgcacct |
7747778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 6256236 - 6256186
Alignment:
| Q |
3 |
ttatgccactttgttatcagtgaaatttggtgttttataatcatagttgaac |
54 |
Q |
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| T |
6256236 |
ttatgtcactttgttaccagtgaaatttggt-ttttctaatcatagttgaac |
6256186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 13282600 - 13282646
Alignment:
| Q |
68 |
aatttcaatatggtatcagctgctgcacctgatatgcatatgtaaac |
114 |
Q |
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| T |
13282600 |
aatttcaatatggtatcagctgctacatctcatatgcatgtgtaaac |
13282646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 14434 - 14501
Alignment:
| Q |
6 |
tgccactttgttatca--gtgaaatttggtgttttataatcatagttgaaccatgatttaatcaaatt |
71 |
Q |
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|||||||||||| ||| ||||||||||||||||| |||| ||| ||| | |||||| |||||||||| |
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| T |
14434 |
tgccactttgttgtcaaagtgaaatttggtgttttctaatgatacttgtatcatgatctaatcaaatt |
14501 |
T |
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