View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4760_low_9 (Length: 251)
Name: NF4760_low_9
Description: NF4760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4760_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 1480206 - 1480446
Alignment:
| Q |
11 |
taatactttcaattactttaatatcattgtgcttcgtcaaaatcaacaaaactctttgtaccaaagtttgttattgataagtatattacttttaattcta |
110 |
Q |
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| T |
1480206 |
taatactttcaattactttaatatcattgtgcttcgtcaaaatcaacaaaactctttgtaccaaagtttgttattgataagtatatcacttttaattcta |
1480305 |
T |
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| Q |
111 |
cgacgcacaagtaaaatagttatgtatgaaatacaatgaaagtagaaatcaatataaagagtatttgtacttcgtattattgataggaatcactttaatc |
210 |
Q |
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| T |
1480306 |
cgacgcacaagtaaaatagttatgtatgaaatacaatgaaagtagaaatcaatataaagagtatttggacttcgtattattgataggaatcactttaatc |
1480405 |
T |
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| Q |
211 |
tatgacacataagtaaacagttttgtaccatacataagttt |
251 |
Q |
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| T |
1480406 |
tatgacacataagtaaacagttttgtaccatacataagttt |
1480446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 1481190 - 1481247
Alignment:
| Q |
119 |
aagtaaaatagttatgtatgaaatacaatgaaagtagaaa-tcaatataaagagtatt |
175 |
Q |
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| T |
1481190 |
aagttaaatagttttgtatgaagtacaatggaagtagaaaatcaatataaagaatatt |
1481247 |
T |
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