View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4761-Insertion-10 (Length: 369)

Name: NF4761-Insertion-10
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4761-Insertion-10
NF4761-Insertion-10
[»] chr5 (1 HSPs)
chr5 (10-369)||(11697490-11697849)


Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 11697490 - 11697849
Alignment:
Q  10 ttgaagggtacataccagatacatcacaagttttgctcgatgtagacgatgaagaaaagaaagagagattgaaatttcatagtcagaagttagcaattgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11697490 ttgaagggtacataccagatacatcacaagttttgctcgatgtagacgatgaagaaaagaaagagagattgaaatttcatagtcagaagttagcaattgc 11697589  T
Q  110 ttttggactcatacatacatctgagggttctcctttaataataacaagaaatcttaggatgtgtagtgactgtcatacttacactaaatacatttccatg 209  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11697590 ttttggactcatacatacatctgagggttctcctttaagaataacaagaaatcttaggatgtgtagtgactgtcatacttacactaaatatatttccatg 11697689  T
Q  210 atctatgaaagggaaattactgtaagagatcgtcttcgtttccaccattttaaaaatggaagttgttcatgtaaagattactggtgaatttcattatgtt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11697690 atctatgaaagggaaattactgtaagagatcgtcttcgtttccaccattttaaaaatggaagttgttcatgtaaagattactggtgaatttcattatgtt 11697789  T
Q  310 tatgattattttgttcctaaggttcctttagaaattaagggtggtattttcctgtctcaa 369  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11697790 tatgattattttgttcttaaggttcctttagaaattaagggtggtattttcctgtctcaa 11697849  T

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