View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4761-Insertion-2 (Length: 164)

Name: NF4761-Insertion-2
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4761-Insertion-2
NF4761-Insertion-2
[»] chr5 (20 HSPs)
chr5 (8-144)||(34123750-34123887)
chr5 (8-144)||(1035292-1035427)
chr5 (8-142)||(28387377-28387510)
chr5 (8-144)||(25896910-25897044)
chr5 (8-144)||(27867676-27867810)
chr5 (18-144)||(7800816-7800941)
chr5 (8-144)||(7021714-7021848)
chr5 (8-144)||(31098763-31098899)
chr5 (8-144)||(34077876-34078010)
chr5 (12-144)||(4204039-4204171)
chr5 (8-144)||(37820711-37820844)
chr5 (8-144)||(28886249-28886383)
chr5 (11-144)||(13567931-13568062)
chr5 (81-144)||(11033292-11033355)
chr5 (81-144)||(33993460-33993523)
chr5 (81-144)||(38860031-38860094)
chr5 (81-136)||(14280004-14280059)
chr5 (81-144)||(18538163-18538226)
chr5 (87-144)||(34944026-34944083)
chr5 (93-144)||(21999246-21999297)
[»] chr3 (24 HSPs)
chr3 (8-144)||(14398643-14398776)
chr3 (8-144)||(48250698-48250834)
chr3 (9-144)||(36817352-36817486)
chr3 (11-144)||(7842843-7842978)
chr3 (20-144)||(46993060-46993183)
chr3 (8-141)||(7837704-7837836)
chr3 (8-144)||(2745059-2745196)
chr3 (8-141)||(50953384-50953519)
chr3 (8-144)||(23442961-23443097)
chr3 (8-144)||(9429677-9429813)
chr3 (8-144)||(13747550-13747683)
chr3 (8-144)||(29929535-29929670)
chr3 (8-144)||(29978689-29978824)
chr3 (12-71)||(11389567-11389626)
chr3 (8-144)||(6740970-6741106)
chr3 (87-144)||(21956033-21956090)
chr3 (8-144)||(6505805-6505940)
chr3 (81-144)||(8160825-8160888)
chr3 (81-144)||(16444778-16444841)
chr3 (81-144)||(30947483-30947546)
chr3 (81-144)||(9582678-9582741)
chr3 (81-135)||(3948909-3948963)
chr3 (8-71)||(29918242-29918305)
chr3 (8-71)||(29967395-29967458)
[»] chr1 (29 HSPs)
chr1 (12-144)||(50117604-50117738)
chr1 (8-144)||(37015000-37015136)
chr1 (8-142)||(23913939-23914071)
chr1 (8-144)||(29356522-29356655)
chr1 (8-144)||(44465679-44465812)
chr1 (8-144)||(41453921-41454054)
chr1 (8-142)||(1654853-1654987)
chr1 (16-144)||(6561990-6562119)
chr1 (8-141)||(15047391-15047522)
chr1 (8-144)||(30905852-30905989)
chr1 (8-144)||(5078023-5078160)
chr1 (25-144)||(22345383-22345502)
chr1 (81-144)||(4516185-4516248)
chr1 (9-141)||(8459931-8460060)
chr1 (8-68)||(9711555-9711615)
chr1 (81-144)||(3948292-3948355)
chr1 (81-144)||(3983267-3983330)
chr1 (81-144)||(13629574-13629637)
chr1 (81-144)||(20349611-20349674)
chr1 (81-144)||(21944206-21944269)
chr1 (81-144)||(31945691-31945754)
chr1 (81-144)||(38775956-38776019)
chr1 (81-144)||(13174018-13174081)
chr1 (89-144)||(22397983-22398038)
chr1 (81-144)||(44620945-44621008)
chr1 (93-144)||(46973395-46973446)
chr1 (81-144)||(19498940-19499003)
chr1 (81-144)||(36076390-36076453)
chr1 (8-38)||(19054184-19054214)
[»] scaffold0116 (1 HSPs)
scaffold0116 (8-144)||(11383-11517)
[»] chr8 (19 HSPs)
chr8 (8-144)||(31957916-31958051)
chr8 (8-144)||(41744549-41744685)
chr8 (8-144)||(2146786-2146921)
chr8 (8-144)||(35966579-35966714)
chr8 (8-142)||(39752854-39752988)
chr8 (28-144)||(20546897-20547012)
chr8 (8-71)||(45454489-45454552)
chr8 (9-144)||(1114851-1114987)
chr8 (18-142)||(43369899-43370022)
chr8 (81-144)||(43689830-43689893)
chr8 (8-144)||(18205895-18206029)
chr8 (81-144)||(7340247-7340310)
chr8 (81-144)||(8423663-8423726)
chr8 (81-144)||(30305399-30305462)
chr8 (81-144)||(32378751-32378814)
chr8 (81-144)||(32432706-32432769)
chr8 (8-58)||(35389617-35389667)
chr8 (81-130)||(45454584-45454633)
chr8 (81-141)||(22577844-22577904)
[»] chr7 (13 HSPs)
chr7 (8-144)||(29593184-29593319)
chr7 (8-144)||(47741846-47741981)
chr7 (8-144)||(18105482-18105617)
chr7 (11-144)||(47061038-47061171)
chr7 (8-144)||(618580-618715)
chr7 (81-144)||(10708110-10708173)
chr7 (8-144)||(43033083-43033217)
chr7 (81-144)||(30786705-30786768)
chr7 (81-144)||(45763560-45763623)
chr7 (8-144)||(42499517-42499654)
chr7 (81-142)||(43623978-43624039)
chr7 (93-144)||(36185987-36186038)
chr7 (89-144)||(15059793-15059848)
[»] chr2 (24 HSPs)
chr2 (8-144)||(24749757-24749894)
chr2 (8-144)||(27276205-27276342)
chr2 (8-144)||(24607407-24607543)
chr2 (9-144)||(1100908-1101042)
chr2 (8-144)||(435451-435587)
chr2 (8-144)||(41008756-41008892)
chr2 (18-144)||(9651284-9651410)
chr2 (8-144)||(1149564-1149705)
chr2 (8-144)||(43950073-43950208)
chr2 (8-144)||(3803397-3803534)
chr2 (8-114)||(41183082-41183188)
chr2 (8-144)||(41053397-41053532)
chr2 (8-144)||(7263125-7263262)
chr2 (8-144)||(10624295-10624429)
chr2 (8-144)||(38945845-38945980)
chr2 (81-144)||(5335041-5335104)
chr2 (81-144)||(18003102-18003165)
chr2 (81-144)||(39794144-39794207)
chr2 (81-144)||(41560185-41560248)
chr2 (81-144)||(213282-213345)
chr2 (81-144)||(34921599-34921662)
chr2 (8-71)||(20950972-20951037)
chr2 (81-144)||(19187051-19187114)
chr2 (96-143)||(45475609-45475656)
[»] chr6 (12 HSPs)
chr6 (8-144)||(7363145-7363281)
chr6 (8-144)||(2052458-2052591)
chr6 (8-144)||(18606153-18606289)
chr6 (8-142)||(7361270-7361404)
chr6 (8-144)||(18347124-18347259)
chr6 (8-144)||(28249994-28250127)
chr6 (8-68)||(13388612-13388672)
chr6 (8-144)||(31146482-31146620)
chr6 (81-144)||(2260175-2260238)
chr6 (81-144)||(26701999-26702062)
chr6 (81-144)||(1612577-1612640)
chr6 (93-144)||(24218209-24218260)
[»] scaffold0361 (1 HSPs)
scaffold0361 (8-144)||(4230-4365)
[»] chr4 (20 HSPs)
chr4 (8-144)||(3403909-3404043)
chr4 (8-144)||(19073483-19073620)
chr4 (8-144)||(4975874-4976009)
chr4 (8-144)||(15999627-15999764)
chr4 (13-144)||(11494657-11494787)
chr4 (8-144)||(41023492-41023629)
chr4 (8-144)||(4768761-4768896)
chr4 (8-144)||(21471012-21471146)
chr4 (8-144)||(38464598-38464733)
chr4 (8-144)||(44049207-44049342)
chr4 (8-144)||(18581161-18581296)
chr4 (8-111)||(4979778-4979881)
chr4 (81-144)||(13173413-13173476)
chr4 (81-144)||(49566305-49566368)
chr4 (8-144)||(9890102-9890239)
chr4 (8-144)||(3449908-3450044)
chr4 (81-144)||(17139785-17139848)
chr4 (8-144)||(1087942-1088079)
chr4 (93-144)||(24417247-24417298)
chr4 (93-144)||(51644328-51644379)
[»] scaffold0219 (1 HSPs)
scaffold0219 (8-144)||(15786-15920)
[»] scaffold0340 (1 HSPs)
scaffold0340 (18-144)||(1011-1135)
[»] scaffold0794 (1 HSPs)
scaffold0794 (8-114)||(5380-5486)
[»] scaffold0494 (1 HSPs)
scaffold0494 (8-144)||(965-1102)
[»] scaffold0038 (1 HSPs)
scaffold0038 (8-144)||(50156-50289)
[»] scaffold0341 (1 HSPs)
scaffold0341 (16-144)||(17180-17309)
[»] scaffold0360 (1 HSPs)
scaffold0360 (8-144)||(7144-7278)
[»] scaffold0260 (1 HSPs)
scaffold0260 (81-144)||(11934-11997)
[»] scaffold0057 (1 HSPs)
scaffold0057 (81-144)||(23072-23135)
[»] scaffold0147 (1 HSPs)
scaffold0147 (8-144)||(689-825)
[»] scaffold0744 (1 HSPs)
scaffold0744 (8-144)||(251-388)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 3e-37; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 34123887 - 34123750
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaat-annnnnnnnnatcaattcttgatccaaaatcgttca 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |         ||||||||||||||||||||| ||||    
T  34123887 ccccctacatactattttcatcatcaacttcatttccacctccattcaatcccaaaatccaataatttttttttatcaattcttgatccaaaatcattca 34123788  T
Q  107 agcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||| ||||||  |||||||||||||||||||||    
T  34123787 agcatcaagcataggaggtatcaacacacttttgacgt 34123750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 1035292 - 1035427
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||          ||||||||||||||||||||| |||||    
T  1035292 ccccctacacactattttcttcatcaacttcatttccacctccattcaatcccaaaatccaat-ttttctttaatcaattcttgatccaaaatcattcaa 1035390  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  1035391 gcatcaagcataggaggtatcaacacacttttgacgt 1035427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 28387377 - 28387510
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||         |||||||||| |||||||||| |||||    
T  28387377 ccccctacacactattttcatcatcaacttcatttctaccaccattcaatcccaaaatccaata-tttttttcatcaattcttaatccaaaatcattcaa 28387475  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgac 142  Q
    ||||||| ||||||  |||||||||||||||||||    
T  28387476 gcatcaagcataggaggtatcaacacacttttgac 28387510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 25897044 - 25896910
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||| |||||||| |||||| |||||||||||||||||||||||| |||||||||||          ||||||||||||||||||||| |||||    
T  25897044 ccccctacacgctattttcttcatcaccttcatttccacctccattcaatcccaaaatccaat--tttttttaatcaattcttgatccaaaatcattcaa 25896947  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  25896946 gcatcaagcataggaggtatcaacacacttttgacgt 25896910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 27867810 - 27867676
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |          ||||||||||||||||||||| |||||    
T  27867810 ccccctacacactattttcttcatcaccttcatttccacctccattcaatcccaaaatccatt--tttttttaatcaattcttgatccaaaatcattcaa 27867713  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||||||| |||||||    
T  27867712 gcatcaagcataggaggtatcaacacactattgacgt 27867676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 7800941 - 7800816
Alignment:
Q  18 actattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcatcaaaca 117  Q
    |||||||||||||||||||||| | |||||||||||||||| | ||||||||||         ||||| ||||||||||||||| |||||||||||||||    
T  7800941 actattttcatcatcaacttcaataccacctccattcaatccccaaatccaatatttttttc-atcaaatcttgatccaaaatcattcaagcatcaaaca 7800843  T
Q  118 tagggtgtatcaacacacttttgacgt 144  Q
    ||||  |||||||||||||||||||||    
T  7800842 taggaggtatcaacacacttttgacgt 7800816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 7021848 - 7021714
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||| |          ||||||| ||||||||||||  |||||    
T  7021848 ccccctacacactattttcttcatcaccttcattttcacctccattcaatcccaaaatccatt--tttttttaatcaatttttgatccaaaataattcaa 7021751  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||||||||  ||||||||||||| |||||||    
T  7021750 gcatcaaacataggaggtatcaacacactattgacgt 7021714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 31098899 - 31098763
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| |  ||| |||||         ||||| ||||||||||||||| |||||    
T  31098899 ccccctacatactattttcatcatcaacttcatttccacctctattcaatcccccaattcaatattttttttcatcaaatcttgatccaaaatcattcaa 31098800  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||  |||||   |||||||||||||||||||||    
T  31098799 gcatcatgcatagaaggtatcaacacacttttgacgt 31098763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 34077876 - 34078010
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||||||||| |||||| || |          ||||||||||||||||||||| |||||    
T  34077876 ccccctacacactattttcttcatcaccttcatttccatctccattcaatcccaaaattcatt--tttttttaatcaattcttgatccaaaatcattcaa 34077973  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||||||| |||||||    
T  34077974 gcatcaagcataggaggtatcaacacactattgacgt 34078010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 4204171 - 4204039
Alignment:
Q  12 ctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcat 111  Q
    |||||||||||||||||||||||||||| | | || ||||| || || | ||||||||||         ||||| ||||||||||||||| |||||||||    
T  4204171 ctacacactattttcatcatcaacttcaatactacttccatccagtccccaaatccaataatttttttcatcaaatcttgatccaaaatcattcaagcat 4204072  T
Q  112 caaacatagggtgtatcaacacacttttgacgt 144  Q
    ||| ||||||  |||||||||||||||||||||    
T  4204071 caagcataggaggtatcaacacacttttgacgt 4204039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 37820844 - 37820711
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||||||  ||||||||||| ||||||||| |          ||||||| ||||||||||||| |||||    
T  37820844 ccccctacacactattttcttcatcaccttcatttccatttccattcaatcccaaaatccatt---ttttttaatcaatttttgatccaaaatcattcaa 37820748  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||||||| |||||||    
T  37820747 gcatcaagcataggaggtatcaacacactattgacgt 37820711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 28886383 - 28886249
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||||| | |||||||||   |||||||||||          ||||||| ||||||||||||| |||||    
T  28886383 ccccctacacactattttcttcatcaccttcatttcctcttccattcaaatccaaaatccaat--tttttttaatcaatttttgatccaaaatcattcaa 28886286  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||||||| |||||||    
T  28886285 gcatcaagcataggaggtatcaacacactattgacgt 28886249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 13568062 - 13567931
Alignment:
Q  11 cctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagca 110  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||  |          ||||||| || |||||||||| ||||||||    
T  13568062 cctacacactattttcttcatcaccttcatttccacctccattcaatcccaaaatcc--ttttttttttaatcaattttttatccaaaatcattcaagca 13567965  T
Q  111 tcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||| |||||   ||||||||||||| |||||||    
T  13567964 tcaagcatagaaggtatcaacacactattgacgt 13567931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 11033355 - 11033292
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||| |||||||||||||| |||||||||||||||||||  |||||||||||| ||||||||    
T  11033355 atcaatccttgatccaaaatcattcaagcatcaaacataggaggtatcaacacacatttgacgt 11033292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 33993460 - 33993523
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||||| ||||||||  |||||||||||| ||||||  |||||||||||||||||||||    
T  33993460 atcaattcttgctccaaaattattcaagcatcaagcataggaggtatcaacacacttttgacgt 33993523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 38860094 - 38860031
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||| |||||||||||||| |||||||||||| ||||||  |||||||||||| ||||||||    
T  38860094 atcaatccttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt 38860031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 14280004 - 14280059
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacact 136  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  |||||||||||||    
T  14280004 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacact 14280059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 18538226 - 18538163
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||||| ||||||||| || ||||||  |||||||||||||||||||||    
T  18538226 atcaaatcttgctccaaaatcattcaagcataaagcataggaggtatcaacacacttttgacgt 18538163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 34944026 - 34944083
Alignment:
Q  87 tcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||||||| || ||||||||| ||||||  |||||||||||||||||||||    
T  34944026 tcttgctccaaaatcattgaagcatcaagcataggaggtatcaacacacttttgacgt 34944083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 21999246 - 21999297
Alignment:
Q  93 tccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||  || ||||||||| ||||||  |||||||||||||||||||||    
T  21999246 tccaaaattattgaagcatcaagcataggaggtatcaacacacttttgacgt 21999297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 1e-36; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 14398643 - 14398776
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |          ||||||||||||||||||||| |||||    
T  14398643 ccccctacacactattttcttcatcaacttcatttccacctccattcaatcccaaaatccatt---ttttttaatcaattcttgatccaaaatcattcaa 14398739  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||||||||  |||||||||||||||||||||    
T  14398740 gcatcaaacataggaggtatcaacacacttttgacgt 14398776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 48250834 - 48250698
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||         |||||||||||||| |||||| |||||    
T  48250834 ccccctacacactattttcttcatcaacttcatttacacctccattcaatcccaaaatccaatatttttttttatcaattcttgatcaaaaatcattcaa 48250735  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||| |||||||||||    
T  48250734 gcatcaagcataggaggtatcaacatacttttgacgt 48250698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 36817486 - 36817352
Alignment:
Q  9 cccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaag 108  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||          ||||||||||||||||||||| ||||||    
T  36817486 cccctacacactattttcttcatcaccttcatttccacctccattcaatcccaaaatccaat-ttttttttaatcaattcttgatccaaaatcattcaag 36817388  T
Q  109 catcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||| ||||||  |||||||||||||||||||||    
T  36817387 catcaagcataggaggtatcaacacacttttgacgt 36817352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 7842978 - 7842843
Alignment:
Q  11 cctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaata--nnnnnnnnnatcaattcttgatccaaaatcgttcaag 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||           ||||||||||||| ||||||| ||||||    
T  7842978 cctacacattattttcatcatcaacttcatttccacctccattcaatcccaaaatccaatatttttttttttatcaattcttgattcaaaatcattcaag 7842879  T
Q  109 catcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||| ||||||  |||||||||||||||||||||    
T  7842878 catcaagcataggaggtatcaacacacttttgacgt 7842843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 46993183 - 46993060
Alignment:
Q  20 tattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcatcaaacata 119  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||         ||||||||||||||||||||| |||||  ||||| ||||    
T  46993183 tattttcatcatcaacttcatttccacctccattcaatcccaaaatccaata-tttttttcatcaattcttgatccaaaatcattcaattatcaagcata 46993085  T
Q  120 gggtgtatcaacacacttttgacgt 144  Q
    ||  |||||||||||||||||||||    
T  46993084 ggaggtatcaacacacttttgacgt 46993060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 7837704 - 7837836
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||||| |||| |||||         ||||| ||||||||||||||| |||||    
T  7837704 ccccctacatactattttcatcatcaacttcaataccacctccattcaatctccaaattcaata-tttttttcatcaaatcttgatccaaaatcattcaa 7837802  T
Q  108 gcatcaaacatagggtgtatcaacacacttttga 141  Q
    ||||||| ||||||  ||||||||||||||||||    
T  7837803 gcatcaagcataggaggtatcaacacacttttga 7837836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 2745196 - 2745059
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||| |||| ||||||||||||         |||||| |||||||||||||| |||    
T  2745196 ccccctacacactattttcttcatcaacttcattttccatctccattccaatcccaaaatccaatatttttttc-atcaatccttgatccaaaatcattc 2745098  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| ||||||  |||||||||||||||||||||    
T  2745097 aagcatcaagcataggaggtatcaacacacttttgacgt 2745059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 50953384 - 50953519
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||| |||| ||||||||||||         | |||| |||||||||||||| |||    
T  50953384 ccccctacacactattttcttcatcaacttcattttccatctccattccaatcccaaaatccaatatttttttccaacaatccttgatccaaaatcattc 50953483  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttga 141  Q
    ||||||||| ||||||  ||||||||||||||||||    
T  50953484 aagcatcaagcataggaggtatcaacacacttttga 50953519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 23443097 - 23442961
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctcc---attcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgtt 104  Q
    ||||||||||||||||||| |||||||||||||||||||||||   |||||||| ||||||||| |          ||||||| ||||||||||||| ||    
T  23443097 ccccctacacactattttcttcatcaacttcatttccacctccattattcaatcccaaaatccatt---ttttttaatcaattattgatccaaaatcatt 23443001  T
Q  105 caagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||||| ||||||  ||||||||||| |||||||||    
T  23443000 caagcatcaagcataggaggtatcaacacagttttgacgt 23442961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 9429813 - 9429677
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||||  |          ||||||| ||||||||||||| |||||    
T  9429813 ccccctacacactgttttcttcatcaccttcatttccacctccattcaatcccaaaatcctttttttttttaaatcaatttttgatccaaaatcattcaa 9429714  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||  |||||  ||||||||||||| |||||||    
T  9429713 gcatcaagtataggaggtatcaacacactattgacgt 9429677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 13747683 - 13747550
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||| |||||||| |||||| |||||||||||||||||||||||| ||||||||| |          ||||||| ||||||||||||| |||||    
T  13747683 ccccctacactctattttcttcatcaccttcatttccacctccattcaatcccaaaatccatt---ttttttaatcaatttttgatccaaaatcattcaa 13747587  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||  |||||  ||||||||||||| |||||||    
T  13747586 gcatcaagtataggaggtatcaacacactattgacgt 13747550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 29929535 - 29929670
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||  | |||| || || ||||| | ||||||||||         ||||| ||||||||||||||| |||||    
T  29929535 ccccctacacactattttcatcatcaacttccataccacttctatccaatccccaaatccaatatttttttc-atcaaatcttgatccaaaatcattcaa 29929633  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  29929634 gcatcaagcataggaggtatcaacacacttttgacgt 29929670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 29978689 - 29978824
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||  | |||| || || ||||| | ||||||||||         ||||| ||||||||||||||| |||||    
T  29978689 ccccctacacactattttcatcatcaacttccataccacttctatccaatccccaaatccaatatttttttc-atcaaatcttgatccaaaatcattcaa 29978787  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  29978788 gcatcaagcataggaggtatcaacacacttttgacgt 29978824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 11389626 - 11389567
Alignment:
Q  12 ctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaata 71  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  11389626 ctacatactattttcttcatcaacttcatttccacctccattcaatctcaaaattcaata 11389567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 6740970 - 6741106
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttcca-cctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttca 106  Q
    |||||||||||||| |||| |||||| ||||||||||| ||||  ||||||| ||||||||| |          ||||||| ||||||||||||| ||||    
T  6740970 ccccctacacactactttcttcatcaccttcatttccaacctcatttcaatcccaaaatccatt-ttttctataatcaatttttgatccaaaatcattca 6741068  T
Q  107 agcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||| ||||||  ||||||||||||| |||||||    
T  6741069 agcatcaagcataggaggtatcaacacactattgacgt 6741106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 21956090 - 21956033
Alignment:
Q  87 tcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||    
T  21956090 tcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 21956033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 6505940 - 6505805
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | |||||| || |||||| | |||| |||||         ||||| ||| ||||||||||| |||||    
T  6505940 ccccctacatactattttcatcatcaacttcaataccaccttcagtcaatccccaaattcaatatttttttc-atcaaatctagatccaaaatcattcaa 6505842  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    || |||| ||||||  |||||||||||| ||||||||    
T  6505841 gcgtcaagcataggaggtatcaacacacatttgacgt 6505805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 8160888 - 8160825
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  8160888 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 8160825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 16444778 - 16444841
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||| |||||||||||||| |||||||||||| ||||||  |||||||||||| ||||||||    
T  16444778 atcaatccttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt 16444841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 30947546 - 30947483
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  30947546 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 30947483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 9582678 - 9582741
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||||| || ||||||||| ||||||  |||||||||||||||||||||    
T  9582678 atcaaatcttgctccaaaatcattgaagcatcaagcataggaggtatcaacacacttttgacgt 9582741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 3948909 - 3948963
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacac 135  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||    
T  3948909 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacac 3948963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 29918305 - 29918242
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaata 71  Q
    |||||||||||||||||||||||| ||||||  | |||| ||||| ||||| | ||||||||||    
T  29918305 ccccctacacactattttcatcattaacttccataccacttccatccaatccccaaatccaata 29918242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 29967458 - 29967395
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaata 71  Q
    |||||||||||||||||||||||| ||||||  | |||| ||||| ||||| | ||||||||||    
T  29967458 ccccctacacactattttcatcattaacttccataccacttccatccaatccccaaatccaata 29967395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 5e-36; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 50117738 - 50117604
Alignment:
Q  12 ctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaata--nnnnnnnnnatcaattcttgatccaaaatcgttcaagc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||           ||||||||||||||||||||| |||||||    
T  50117738 ctacacactattttcatcatcaacttcatttccacctccattcaatcccaaaatccaatatttttttttttatcaattcttgatccaaaatcattcaagc 50117639  T
Q  110 atcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||||  |||||||||||||||||||||    
T  50117638 atcaagcataggaggtatcaacacacttttgacgt 50117604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 37015000 - 37015136
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||         ||||||||||||||||||||| | |||    
T  37015000 ccccctacatacttttttcatcatcaacttcatttccacctcctttcaatccccaaatccaatatttttttttatcaattcttgatccaaaatcatccaa 37015099  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  37015100 gcatcaagcataggaggtatcaacacacttttgacgt 37015136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 23913939 - 23914071
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||  ||||||||||          ||||||||||||||||||||| |||||    
T  23913939 ccccctacacactattttcttcatcaccttcatttccacctccattcaatccaaaaatccaat--ttattttaatcaattcttgatccaaaatcattcaa 23914036  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgac 142  Q
    ||||||| ||||||  |||||||||||||||||||    
T  23914037 gcatcaagcataggaggtatcaacacacttttgac 23914071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 29356655 - 29356522
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |          ||||||| ||||||||||||| |||||    
T  29356655 ccccctacacactattttcttcatcaccttcatttccacctccattcaatcccaaaatccatt---ttttttaatcaatttttgatccaaaatcattcaa 29356559  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||||||| |||||||    
T  29356558 gcatcaagcataggaggtatcaacacactattgacgt 29356522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 44465679 - 44465812
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |          ||||||||||||||||||||| |||||    
T  44465679 ccccctacacactattttcttcatcaccttcatttccacctccattcaatcccaaaatccatt---ttttttaatcaattcttgatccaaaatcattcaa 44465775  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||| ||| |||||||    
T  44465776 gcatcaagcataggaggtatcaacagactattgacgt 44465812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 41453921 - 41454054
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||  |          ||||||| ||||||||||||| |||||    
T  41453921 ccccctacacactattttcttcatcaccttcatttccacctccattcaatcccaaaatccttt---ttttttaatcaatttttgatccaaaatcattcaa 41454017  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||||||| |||||||    
T  41454018 gcatcaagcataggaggtatcaacacactattgacgt 41454054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 1654853 - 1654987
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||  | |||| ||||| ||||| | |||| |||||         ||||| ||||||||||||||| |||||    
T  1654853 ccccctacacactattttcatcatcaacttccataccacttccatccaatccccaaattcaatattttttttcatcaaatcttgatccaaaatcattcaa 1654952  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgac 142  Q
    ||||||| ||||||  |||||||||||||||||||    
T  1654953 gcatcaagcataggaggtatcaacacacttttgac 1654987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 6562119 - 6561990
Alignment:
Q  16 acactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcatca 113  Q
    ||||||||||| ||||||||||||||| ||| |||||||| |||| ||||||||||||         |||||| |||||||||||||| |||||||||||    
T  6562119 acactattttcttcatcaacttcattttccatctccattccaatcccaaaatccaatattttttcc-atcaatccttgatccaaaatcattcaagcatca 6562021  T
Q  114 aacatagggtgtatcaacacacttttgacgt 144  Q
    | ||||||  |||||||||||||||||||||    
T  6562020 agcataggaggtatcaacacacttttgacgt 6561990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 15047391 - 15047522
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||| ||||||||||| |||||| ||||||||||||| |||||||||| ||||||||| |          ||||||| ||||||||||||| |||||    
T  15047391 ccccctatacactattttcttcatcaccttcatttccacccccattcaatcccaaaatccatt--tttttttaatcaatttttgatccaaaatcattcaa 15047488  T
Q  108 gcatcaaacatagggtgtatcaacacacttttga 141  Q
    ||||||| ||||||  ||||||||||||| ||||    
T  15047489 gcatcaagcataggaggtatcaacacactattga 15047522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 30905852 - 30905989
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||  |||||||||||         |||||| |||||||||||||| |||    
T  30905852 ccccctacacactattttcttcatcaacttcattttccatctccattccaatccaaaaatccaatattttttcc-atcaatccttgatccaaaatcattc 30905950  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| ||||||  |||||||||||| ||||||||    
T  30905951 aagcatcaagcataggaggtatcaacacacatttgacgt 30905989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 5078023 - 5078160
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||  |||||||||||         |||||| |||||||||||||| |||    
T  5078023 ccccctacacactattttcttcatcaacttcattttccatctccattccaatccaaaaatccaatattttttcc-atcaatccttgatccaaaatcattc 5078121  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| |||| |  |||||||||||| ||||||||    
T  5078122 aagcatcaagcataagaggtatcaacacacatttgacgt 5078160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 22345383 - 22345502
Alignment:
Q  25 tcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcatcaaacatagggtg 124  Q
    ||||||||||||||  | |||| ||||||||||| | ||||||||||         ||||| ||||||||||||||| |||||||||||| ||||||  |    
T  22345383 tcatcatcaacttccataccacgtccattcaatccccaaatccaatatattttttcatcaaatcttgatccaaaatcattcaagcatcaagcataggagg 22345482  T
Q  125 tatcaacacacttttgacgt 144  Q
    ||||||||||||||| ||||    
T  22345483 tatcaacacactttttacgt 22345502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 4516185 - 4516248
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  4516185 atcaaatcttgctccaaaatcattcaagcatcaaacataggaggtatcaacacacttttgacgt 4516248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 8460060 - 8459931
Alignment:
Q  9 cccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaag 108  Q
    ||||||||||||||||||||||||||||||| | | |||   || ||||| | ||||||||||         ||||| ||||||||||||||| ||||||    
T  8460060 cccctacacactattttcatcatcaacttcaatactacc---atccaatccccaaatccaatattttttttcatcaaatcttgatccaaaatcattcaag 8459964  T
Q  109 catcaaacatagggtgtatcaacacacttttga 141  Q
    |||||| |||| |  ||||||||||||||||||    
T  8459963 catcaagcataagaggtatcaacacacttttga 8459931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 9711615 - 9711555
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatcca 68  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| |||| | |||||||    
T  9711615 ccccctacatactattttcatcatcaatttcatttccacctccatttaatccccaaatcca 9711555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 3948355 - 3948292
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  3948355 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 3948292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 3983267 - 3983330
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  3983267 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 3983330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 13629574 - 13629637
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||| |||||||||||||| |||||||||||| ||||||  |||||||||||| ||||||||    
T  13629574 atcaatccttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt 13629637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 20349611 - 20349674
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  20349611 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 20349674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 21944269 - 21944206
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||||| |||||||||||||||||||  |||||||||||||||| ||||    
T  21944269 atcaaatcttgctccaaaatcattcaagcatcaaacataggaggtatcaacacacttttaacgt 21944206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 31945754 - 31945691
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  31945754 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 31945691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 38776019 - 38775956
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  38776019 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 38775956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 13174018 - 13174081
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||||| |||||||||||| |||| |  |||||||||||||||||||||    
T  13174018 atcaaatcttgctccaaaatcattcaagcatcaagcatatgaggtatcaacacacttttgacgt 13174081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 22397983 - 22398038
Alignment:
Q  89 ttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||||||| |||||||||||| ||||||  |||||||||||| ||||||||    
T  22397983 ttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt 22398038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 44621008 - 44620945
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||| |||||||||||||| ||||| |||||| ||||||  |||||||||||| ||||||||    
T  44621008 atcaatccttgatccaaaatcattcaatcatcaagcataggaggtatcaacacacatttgacgt 44620945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 46973395 - 46973446
Alignment:
Q  93 tccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| |||||||||||| ||||||  |||||||||||||||||||||    
T  46973395 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 46973446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 19499003 - 19498940
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||  | |||||||||||| ||||||  |||||||||||||||||||||    
T  19499003 atcaaatcttgctccaaatacattcaagcatcaagcataggaggtatcaacacacttttgacgt 19498940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 36076453 - 36076390
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||||||||||| | |||||||||||| |||||    ||||||||||||||||||||    
T  36076453 atcaaatcttgatccaaaaacattcaagcatcaagcatagaagatatcaacacacttttgacgt 36076390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 19054214 - 19054184
Alignment:
Q  8 ccccctacacactattttcatcatcaacttc 38  Q
    |||||||||||||||||||||||||||||||    
T  19054214 ccccctacacactattttcatcatcaacttc 19054184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 74; Significance: 3e-34; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 11383 - 11517
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||          ||||||||||||||||||||| |||||    
T  11383 ccccctacatactattttcttcatcaacttcatttccacctccattcaatcccaaaatccaat--tttttttaatcaattcttgatccaaaatcattcaa 11480  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  11481 gcatcaagcataggaggtatcaacacacttttgacgt 11517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 31957916 - 31958051
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||         ||||||||||||||||||||| |||||    
T  31957916 ccccctacacactattttcttcatcaacttcattttcccctccattcaatcccaaaatccaata-tttttttaatcaattcttgatccaaaatcattcaa 31958014  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  31958015 gcatcaagcataggaggtatcaacacacttttgacgt 31958051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 41744685 - 41744549
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||         |||||||||| ||| |||||| |||||    
T  41744685 ccccctacacactattttcatcatcaacttcatttctaccaccattcaatcccaaaatccaatattttttttcatcaattcttaatctaaaatcattcaa 41744586  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||| |||||||||||    
T  41744585 gcatcaagcataggaggtatcaacatacttttgacgt 41744549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 2146921 - 2146786
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||| | ||||||||||         ||||| ||||||||||||||| |||||    
T  2146921 ccccctacatactattttcatcatcaacttcaataccacctccattcaatccccaaatccaatatttttttc-atcaaatcttgatccaaaatcattcaa 2146823  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  2146822 gcatcaagcataggaggtatcaacacacttttgacgt 2146786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 35966714 - 35966579
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaa-tccaatannnnnnnnnatcaattcttgatccaaaatcgttca 106  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||  ||||| |||||||         ||||||||||||||||||||| ||||    
T  35966714 ccccctacatactattttcatcatcaacttcattttcacctccattcaattccaaaaatccaatattttttt--atcaattcttgatccaaaatcattca 35966617  T
Q  107 agcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||| ||||||  |||||||||||||||| ||||    
T  35966616 agcatcaagcataggaggtatcaacacacttttaacgt 35966579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 39752988 - 39752854
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||| | ||||||||||         ||||| |||||||| |||||| |||||    
T  39752988 ccccctacatactattttcatcatcaacttcaataccacctccattcaatccccaaatccaatattttttttcatcaaatcttgatctaaaatcattcaa 39752889  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgac 142  Q
    | ||||| ||||||  |||||||||||||||||||    
T  39752888 gtatcaagcataggaggtatcaacacacttttgac 39752854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 20546897 - 20547012
Alignment:
Q  28 tcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtat 127  Q
    ||||||||||||||||||||||||||||||| |||||||||||          ||||||||||||||||||||| |||||||||||| ||||||  ||||    
T  20546897 tcatcaacttcatttccacctccattcaatcccaaaatccaat-ttttttttaatcaattcttgatccaaaatcattcaagcatcaagcataggaggtat 20546995  T
Q  128 caacacacttttgacgt 144  Q
    ||| |||||||||||||    
T  20546996 caatacacttttgacgt 20547012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 45454489 - 45454552
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaata 71  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  45454489 ccccctacatactattttcatcatcaacttcatttccacctccattcaatccccaaatccaata 45454552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 1114851 - 1114987
Alignment:
Q  9 cccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttca 106  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||||| ||||  |||||||||||         |||||| |||||||||||||| ||||    
T  1114851 cccctacacactattttcttcatcaacttcattttccatctccattccaatccaaaaatccaatattttttcc-atcaatccttgatccaaaatcattca 1114949  T
Q  107 agcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||| ||||||  |||||||||||| ||||||||    
T  1114950 agcatcaagcataggaggtatcaacacacatttgacgt 1114987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 43369899 - 43370022
Alignment:
Q  18 actattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcatcaaaca 117  Q
    |||||||||||||||||||||| | |||||||||||||||| | ||||||||||         | ||| ||||||||||||||| ||||||||| || ||    
T  43369899 actattttcatcatcaacttcaataccacctccattcaatccccaaatccaatatttttttcaa-caaatcttgatccaaaatcattcaagcatgaagca 43369997  T
Q  118 tagggtgtatcaacacacttttgac 142  Q
    ||||  |||||||||||||||||||    
T  43369998 taggaggtatcaacacacttttgac 43370022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 43689893 - 43689830
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||    
T  43689893 atcaaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 43689830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 18205895 - 18206029
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||| |||||||||||||  | |||| ||||| ||| | | ||||||||||         ||||| ||||||||||||||| |||||    
T  18205895 ccccctacacactattt-catcatcaacttccataccacttccatccaaaccccaaatccaatatttttttc-atcaaatcttgatccaaaatcattcaa 18205992  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||| ||||||||||||||||    
T  18205993 gcatcaagcataggaggtattaacacacttttgacgt 18206029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 7340247 - 7340310
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  7340247 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 7340310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 8423726 - 8423663
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  8423726 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 8423663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 30305462 - 30305399
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  30305462 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 30305399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 32378814 - 32378751
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  32378814 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 32378751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 32432769 - 32432706
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  32432769 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 32432706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 35389617 - 35389667
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatc 58  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  35389617 ccccctacatactattttcatcatcaacttcaataccacctccattcaatc 35389667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 45454584 - 45454633
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaa 130  Q
    ||||||||||||||||||||| ||||| |||||| ||||||  |||||||    
T  45454584 atcaattcttgatccaaaatcattcaaacatcaagcataggaggtatcaa 45454633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 22577844 - 22577904
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttga 141  Q
    ||||| |||||  |||||||| ||| |||||||| ||||||  ||||||||||||||||||    
T  22577844 atcaaatcttgcaccaaaatcattcgagcatcaagcataggaggtatcaacacacttttga 22577904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 1e-33; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 29593319 - 29593184
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||         |||||||||| |||||||||| |||||    
T  29593319 ccccctacacactattttcatcatcaacttcatttctaccaccattcaatcccaaaatccaata-tttttttcatcaattcttaatccaaaatcattcaa 29593221  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  29593220 gcatcaagcataggaggtatcaacacacttttgacgt 29593184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 47741846 - 47741981
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||         ||||||||||||||||||||| |||||    
T  47741846 ccccctacatactattttcatcatcaacttcatttccacctccattcaatcccaaaatctaata-cttttttcatcaattcttgatccaaaatcattcaa 47741944  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||| |||||||||||||    
T  47741945 gcatcaagcataggaggtatcaagacacttttgacgt 47741981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 18105482 - 18105617
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||  |          ||||||| ||||||||||||| |||||    
T  18105482 ccccctacacactattttcttcatcaccttcatttccacctccattcaatcccaaaatcc-tttttttttttaatcaatttttgatccaaaatcattcaa 18105580  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||||||| |||||||    
T  18105581 gcatcaagcataggaggtatcaacacactattgacgt 18105617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 47061038 - 47061171
Alignment:
Q  11 cctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagca 110  Q
    ||||||||||||||||||||||||||||  | |||| ||||| ||||| | ||||||||||         ||||| | ||||||||||||| ||||||||    
T  47061038 cctacacactattttcatcatcaacttccataccacttccatccaatccccaaatccaatattttttttcatcaaatattgatccaaaatcattcaagca 47061137  T
Q  111 tcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||| ||||||  |||||||||||||||||||||    
T  47061138 tcaagcataggaggtatcaacacacttttgacgt 47061171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 618715 - 618580
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| ||||||||||| | |||||||||| |||||||| ||          ||||||| ||||||||||||| |||||    
T  618715 ccccctacacactattttcttcatcaccttcatttccaaccccattcaatcccaaaatcc-attttttttgtaatcaatttttgatccaaaatcattcaa 618617  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||||||| |||||||    
T  618616 gcatcaagcataggaggtatcaacacactattgacgt 618580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 10708173 - 10708110
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||    
T  10708173 atcaaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 10708110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 43033083 - 43033217
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttcca-cctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttca 106  Q
    ||||||||||||||||||  |||||| ||||||||||| ||||  ||||||| ||||||||| ||         ||||||| ||||||||||||| ||||    
T  43033083 ccccctacacactatttt--tcatcaccttcatttccaacctcatttcaatcccaaaatccattatttctata-atcaatttttgatccaaaatcattca 43033179  T
Q  107 agcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||| ||||||  ||||||||||||| |||||||    
T  43033180 agcatcaagcataggaggtatcaacacactattgacgt 43033217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 30786705 - 30786768
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  30786705 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 30786768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 45763560 - 45763623
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  45763560 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 45763623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 42499517 - 42499654
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttc-cacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||| ||||||| |||||||||||||||  || |||||||| ||||  |||||||||||         |||||| |||||||||||||| ||     
T  42499517 ccccctacacattattttcttcatcaacttcatttttcatctccattccaatccaaaaatccaatattttttcc-atcaatccttgatccaaaatcattg 42499615  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| ||||||  |||||||||||| ||||||||    
T  42499616 aagcatcaagcataggaggtatcaacacacatttgacgt 42499654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 43624039 - 43623978
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgac 142  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||    
T  43624039 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgac 43623978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 36185987 - 36186038
Alignment:
Q  93 tccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| |||||||||||| ||||||  |||||||||||||||||||||    
T  36185987 tccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 36186038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 15059793 - 15059848
Alignment:
Q  89 ttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||||||| |||||||||||| ||||||  |||||||||||  ||||||||    
T  15059793 ttgatccaaaatcattcaagcatcaagcataggaggtatcaacacatatttgacgt 15059848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 24749757 - 24749894
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaa-tannnnnnnnnatcaattcttgatccaaaatcgttca 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |          ||||||||||||||||||||| ||||    
T  24749757 ccccctacacactattttcttcatcaacttcatttccacctccattcaatcccaaaatccaatttttttttttaatcaattcttgatccaaaatcattca 24749856  T
Q  107 agcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||| |||| |  |||||||||||||||||||||    
T  24749857 agcatcaagcataagaggtatcaacacacttttgacgt 24749894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 27276342 - 27276205
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatc-caatannnnnnnnnatcaattcttgatccaaaatcgttca 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  |||          ||||||||||||||||||||| ||||    
T  27276342 ccccctacacactattttcttcatcaacttcatttccacctccattcaatcccaaaatctaaattttttttttaatcaattcttgatccaaaatcattca 27276243  T
Q  107 agcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||| ||||||  |||||||||||||||||||||    
T  27276242 agcatcaagcataggaggtatcaacacacttttgacgt 27276205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 24607543 - 24607407
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||| | ||||||||||         ||||| ||||||||||||||| |||||    
T  24607543 ccccctacatactattttcatcatcaacttcaataccacctccattcaatccccaaatccaatattttttttcatcaaatcttgatccaaaatcattcaa 24607444  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  24607443 gcatcaagcataggaggtatcaacacacttttgacgt 24607407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 1101042 - 1100908
Alignment:
Q  9 cccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaag 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||         || |||||||||||||||||| ||||||    
T  1101042 cccctacatactattttcatcatcaacttcatttccacctccattcaatccccaaatccaata-ttttttttattaattcttgatccaaaatcattcaag 1100944  T
Q  109 catcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||  |||||  |||||||||||||||||||||    
T  1100943 catcaagtataggaggtatcaacacacttttgacgt 1100908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 435451 - 435587
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||| | | || ||||| ||||| | ||||||||||         ||||| |||||||| |||||| |||||    
T  435451 ccccctacacactattttcatcatcaacttcaatactacttccatccaatccccaaatccaataatttttttcatcaaatcttgatctaaaatcattcaa 435550  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||||||||  |||||||||||||||||||||    
T  435551 gcatcaaacataggaggtatcaacacacttttgacgt 435587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 41008892 - 41008756
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||| | | || ||||| ||||| | ||||||||||         ||||| ||||||||||||||| |||||    
T  41008892 ccccctacacactattttcatcatcaacttcaatactacttccatccaatccccaaatccaataatttttttcatcaaatcttgatccaaaatcattcaa 41008793  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  41008792 gcatcaagcataggaggtatcaacacacttttgacgt 41008756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 9651284 - 9651410
Alignment:
Q  18 actattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcatcaaaca 117  Q
    |||||||||||||||||||||| | ||||||||| |||||| | ||||||||||         ||||| ||||||||||||||| |||||||||||| ||    
T  9651284 actattttcatcatcaacttcaataccacctccaatcaatccccaaatccaatattttttttcatcaaatcttgatccaaaatcattcaagcatcaagca 9651383  T
Q  118 tagggtgtatcaacacacttttgacgt 144  Q
    ||||  |||||||||||||||||||||    
T  9651384 taggaggtatcaacacacttttgacgt 9651410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 1149564 - 1149705
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnn------atcaattcttgatccaaaatc 101  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |||||               |||||||||||||||||||||    
T  1149564 ccccctacatactattttcatcatcaacttcatttccacctc-attcaatcccaaaattcaatatttatttatttttttatcaattcttgatccaaaatc 1149662  T
Q  102 gttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
     |||||||||||| ||||||  |||||||||||||||||||||    
T  1149663 attcaagcatcaagcataggaggtatcaacacacttttgacgt 1149705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 43950208 - 43950073
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||  | |||| ||||| ||||| | |||| |||||         ||||| ||||||||||||||| |||||    
T  43950208 ccccctacacactattttcatcatcaacttccataccacttccatccaatccccaaattcaatatttttttc-atcaaatcttgatccaaaatcattcaa 43950110  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  43950109 gcatcaagcataggaggtatcaacacacttttgacgt 43950073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 3803534 - 3803397
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttc-cacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| |||||||||||||||  || |||||||| |||| ||||||||||||         | |||| |||||||||||||| |||    
T  3803534 ccccctacacactattttcttcatcaacttcatttttcatctccattccaatcccaaaatccaatattttttccaa-caatccttgatccaaaatcattc 3803436  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| ||||||  |||||||||||||||||||||    
T  3803435 aagcatcaagcataggaggtatcaacacacttttgacgt 3803397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 41183188 - 41183082
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||| | ||||||||||         ||||| ||||||||||||||| |||||    
T  41183188 ccccctacatactattttcatcatcaacttcaataccacctccattcaatccccaaatccaatattttttttcatcaaatcttgatccaaaatcattcaa 41183089  T
Q  108 gcatcaa 114  Q
    |||||||    
T  41183088 gcatcaa 41183082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 41053532 - 41053397
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||| | |||||||||||||||||||||| | |||||| ||||||||| | |||| |||||         ||||| |||||||||||| || |||||    
T  41053532 ccccctatatactattttcatcatcaacttcaataccaccttcattcaatccccaaattcaatatttttttc-atcaaatcttgatccaaattcattcaa 41053434  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  41053433 gcatcaagcataggaggtatcaacacacttttgacgt 41053397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 7263125 - 7263262
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||  |||||||||||         |||||| |||||||||||||| |||    
T  7263125 ccccctacacactattttcttcatcaacttcattttccatctccattccaatccaaaaatccaatattttttcc-atcaatccttgatccaaaatcattc 7263223  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    || |||||| ||||||  |||||||||||| ||||||||    
T  7263224 aatcatcaagcataggaggtatcaacacacatttgacgt 7263262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 10624429 - 10624295
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttcca-cctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttca 106  Q
    ||||||||||||||||||  |||||| ||||||||||| ||||  ||||||| ||||||||| ||         ||||||| ||||||||||||| ||||    
T  10624429 ccccctacacactatttt--tcatcaccttcatttccaacctcatttcaatcccaaaatccattatttctata-atcaatttttgatccaaaatcattca 10624333  T
Q  107 agcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||| ||||||  ||||||||||||| |||||||    
T  10624332 agcatcaagcataggaggtatcaacacactattgacgt 10624295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 38945845 - 38945980
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccatt-caatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttca 106  Q
    ||||||||||||||||||| |||||| ||||||||||| | ||||| ||||| ||||||||| |          | ||||| ||||||||||||| ||||    
T  38945845 ccccctacacactattttcttcatcaccttcatttccaaccccatttcaatcccaaaatccatt--tttttttaagcaatttttgatccaaaatcattca 38945942  T
Q  107 agcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||| ||||||  ||||||||||||| |||||||    
T  38945943 agcatcaagcataggaggtatcaacacactattgacgt 38945980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 5335041 - 5335104
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  5335041 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 5335104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 18003165 - 18003102
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  18003165 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 18003102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 39794144 - 39794207
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||| |||||||||||||| |||||||||||| ||||||  |||||||||||| ||||||||    
T  39794144 atcaatccttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt 39794207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 41560185 - 41560248
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  41560185 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 41560248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 213345 - 213282
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||| ||||| |||||||    
T  213345 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaaaacactattgacgt 213282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 34921662 - 34921599
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||||||||||||| |||||||||||| ||||||  ||||||||| ||||| |||||    
T  34921662 atcaaatcttgatccaaaatcattcaagcatcaagcataggaggtatcaacaaactttcgacgt 34921599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 20951037 - 20950972
Alignment:
Q  8 ccccctacacactattttcatcatcaacttca-tttccacctccatt-caatctcaaaatccaata 71  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||| |||||  |||||||||||    
T  20951037 ccccctacacactattttcttcatcaacttcattttccatctccattccaatccaaaaatccaata 20950972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 19187114 - 19187051
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||||| |||||| ||||| ||||||  |||||||||||| ||||||||    
T  19187114 atcaaatcttgctccaaaatcattcaagtatcaagcataggaggtatcaacacacatttgacgt 19187051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 45475609 - 45475656
Alignment:
Q  96 aaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacg 143  Q
    |||||| |||||||||||| ||||||  ||| ||||||||||||||||    
T  45475609 aaaatcattcaagcatcaagcataggaggtaccaacacacttttgacg 45475656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 7363281 - 7363145
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||| | |||| |||||         ||||| ||||||||||||||| |||||    
T  7363281 ccccctacatactattttcatcatcaacttcaataccacctccattcaatccccaaattcaatattttttttcatcaaatcttgatccaaaatcattcaa 7363182  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  7363181 gcatcaagcataggaggtatcaacacacttttgacgt 7363145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 2052591 - 2052458
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||| | |||||||||          ||||| ||||||||||||||| |||||    
T  2052591 ccccctacatactattttcatcatcaacttcaataccacctccattcaatccccaaatccaat---ttttttcatcaaatcttgatccaaaatcattcaa 2052495  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  2052494 gcatcaagcataggaggtatcaacacacttttgacgt 2052458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 18606153 - 18606289
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||  | |||| ||||| ||||| | ||||||||||         ||||| ||||||| ||||||| |||||    
T  18606153 ccccctacacactattttcatcatcaacttccataccacttccatccaatccccaaatccaatatttttttccatcaaatcttgattcaaaatcattcaa 18606252  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  18606253 gcatcaagcataggaggtatcaacacacttttgacgt 18606289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 7361270 - 7361404
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnn-atcaattcttgatccaaaatcgttca 106  Q
    ||||||||| |||||||||||||||||||||| | |||||| |||||||||||||| |||||||          ||||| |||| |||||||||| ||||    
T  7361270 ccccctacatactattttcatcatcaacttcaataccaccttcattcaatctcaaa-tccaatatttttttttcatcaaatcttaatccaaaatcattca 7361368  T
Q  107 agcatcaaacatagggtgtatcaacacacttttgac 142  Q
    |||||||||||||||  |||||||||||||||||||    
T  7361369 agcatcaaacataggaggtatcaacacacttttgac 7361404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 18347124 - 18347259
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| ||||||||||| | |||||||||| |||||||| ||          ||||||| ||||||||||||| |||||    
T  18347124 ccccctacacactattttcttcatcaccttcatttccaaccccattcaatcccaaaatcc-attttttttgtaatcaatttttgatccaaaatcattcaa 18347222  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||||||| |||||||    
T  18347223 gcatcaagcataggaggtatcaacacactattgacgt 18347259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 28249994 - 28250127
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||||||| |          ||||||| ||||||||||||| |||||    
T  28249994 ccccctacacactattttcttcatcaccttcatttccacttccattcaatcccaaaatccatt---ttttttaatcaatttttgatccaaaatcattcaa 28250090  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    || |||| |||||   ||||||||||||| |||||||    
T  28250091 gcgtcaagcatagaaggtatcaacacactattgacgt 28250127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 13388672 - 13388612
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatcca 68  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||    
T  13388672 ccccctacacactattttcttcatcaccttcatttccacctccattcaatcccaaaatcca 13388612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 31146482 - 31146620
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnn---atcaattcttgatccaaaatcgtt 104  Q
    ||||||||||||||||| ||||||||||||||||| | |  |||||||||| | ||||||||||            ||||| | ||||||||||||| ||    
T  31146482 ccccctacacactattt-catcatcaacttcattttccctaccattcaatccccaaatccaatattattattttttatcaaatattgatccaaaatcatt 31146580  T
Q  105 caagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||||||| ||||||  |||||||||||||||||||||    
T  31146581 caagcatcaagcataggaggtatcaacacacttttgacgt 31146620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 2260238 - 2260175
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||||| || ||||||||||||||||  |||||||||||||||||||||    
T  2260238 atcaaatcttgctccaaaatcattgaagcatcaaacataggcggtatcaacacacttttgacgt 2260175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 26701999 - 26702062
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||||| |||||||||||| ||||||  |||||||||||||||||||||    
T  26701999 atcaaatcttgctccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 26702062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 1612640 - 1612577
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||| ||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  1612640 atcaatttttgattcaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 1612577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 24218209 - 24218260
Alignment:
Q  93 tccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| || ||||||||| ||||||  |||||||||||||| ||||||    
T  24218209 tccaaaatcattgaagcatcaagcataggaggtatcaacacacttctgacgt 24218260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 65; Significance: 7e-29; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 4365 - 4230
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| ||||||||| | |||||||||||||||| |||||||||||  ||||||||||||         ||||||||||||||||||||| |||||    
T  4365 ccccctacaaactattttcttgatcaacttcatttccatctccattcaattccaaaatccaatattttttta-atcaattcttgatccaaaatcattcaa 4267  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  4266 gcatcaagcataggaggtatcaacacacttttgacgt 4230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 4e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 3403909 - 3404043
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |          ||||||| ||||||||||||| |||||    
T  3403909 ccccctacacactattttcttcatcaccttcatttccacctccattcaatcccaaaatccatt--tttttttgatcaatttttgatccaaaatcattcaa 3404006  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||||||| |||||||    
T  3404007 gcatcaagcataggaggtatcaacacactattgacgt 3404043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 19073620 - 19073483
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||| |||| ||||||||||||         |||||| |||||||||||||| |||    
T  19073620 ccccctacacactattttcttcatcaacttcattttccatctccattccaatcacaaaatccaatattttttcc-atcaatccttgatccaaaatcattc 19073522  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| ||||||  |||||||||||||||||||||    
T  19073521 aagcatcaagcataggaggtatcaacacacttttgacgt 19073483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 4975874 - 4976009
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||||||| | |||| |||||         ||||| ||||||||||||||| ||| |    
T  4975874 ccccctacatactatttttatcatcaacttcaataccacctccattcaatccccaaattcaatatttttttc-atcaaatcttgatccaaaatcattcca 4975972  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  4975973 gcatcaagcataggaggtatcaacacacttttgacgt 4976009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 15999764 - 15999627
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||  |||||||||||         |||||| |||||||||||||| |||    
T  15999764 ccccctacacactattttcttcatcaacttcattttccatctccattccaatccaaaaatccaatattttttcc-atcaatccttgatccaaaatcattc 15999666  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| ||||||  |||||||||||| ||||||||    
T  15999665 aagcatcaagcataggaggtatcaacacacatttgacgt 15999627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 11494657 - 11494787
Alignment:
Q  13 tacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcatc 112  Q
    ||||||||||||||||||||||||||  | |||| ||||| ||||| | ||||||||||         ||||| ||||||||||||||| ||||||||||    
T  11494657 tacacactattttcatcatcaacttccataccacttccatccaatccccaaatccaatatttttttc-atcaaatcttgatccaaaatcattcaagcatc 11494755  T
Q  113 aaacatagggtgtatcaacacacttttgacgt 144  Q
    || ||||||  ||||| |||||||||||||||    
T  11494756 aagcataggaggtatccacacacttttgacgt 11494787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 41023492 - 41023629
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||| ||||||| ||||||||||||||| ||| |||||||| |||| || |||||||||         ||||||  ||||||||||||| |||    
T  41023492 ccccctacacattattttcttcatcaacttcattttccatctccattccaatcccagaatccaatattttttcc-atcaatcattgatccaaaatcattc 41023590  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| ||||||  |||||||||||||||||||||    
T  41023591 aagcatcaagcataggaggtatcaacacacttttgacgt 41023629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 4768761 - 4768896
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| ||||||||||||||||| |||  | |||| ||||| ||||| | ||||||||||         ||||| ||||||||||||||| |||||    
T  4768761 ccccctacatactattttcatcatcaatttccataccacttccatccaatccctaaatccaatatttttttc-atcaaatcttgatccaaaatcattcaa 4768859  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||| ||||||||||    
T  4768860 gcatcaagcataggaggtatcaacacccttttgacgt 4768896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 21471012 - 21471146
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||| ||||||||||||||||| ||||||||  | |||| ||||| ||||  | ||||||||||         ||||| ||||||||||||||| |||||    
T  21471012 ccccatacacactattttcatcgtcaacttccataccacttccatccaattcccaaatccaatattttttc--atcaaatcttgatccaaaatcattcaa 21471109  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  21471110 gcatcaagcataggaggtatcaacacacttttgacgt 21471146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 38464733 - 38464598
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||  | |||| ||||| ||||| | ||||||||||         ||||| ||||||||||||||| |||||    
T  38464733 ccccctacacactattttcatcatcaacttccataccacttccatccaatccccaaatccaata-ttttgttcatcaaatcttgatccaaaatcattcaa 38464635  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| |||| |  |||| | ||||||||||||||    
T  38464634 gcatcaagcataagaggtattagcacacttttgacgt 38464598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 44049207 - 44049342
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | ||  || ||||||||| | |||| |||||         | ||| ||||||||||||||| |||||    
T  44049207 ccccctacatactattttcatcatcaacttcaataccttctacattcaatccccaaattcaatatttttttc-accaaatcttgatccaaaatcattcaa 44049305  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  44049306 gcatcaagcataggaggtatcaacacacttttgacgt 44049342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 18581296 - 18581161
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||| |||||||||||||  | |||| ||||| ||| | | ||||||||||         ||||| ||||| ||||||||| |||||    
T  18581296 ccccctacacactattt-catcatcaacttccataccacttccatccaaaccccaaatccaatattttttttcatcaaatcttgctccaaaatcattcaa 18581198  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  ||||||||| |||||||||||    
T  18581197 gcatcaagcataggaggtatcaacagacttttgacgt 18581161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 4979881 - 4979778
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| ||||||||||||||||||||||    ||||||||||||||| | ||||||||||         ||||| ||||||||||||||| |||||    
T  4979881 ccccctacatactattttcatcatcaacttcaacatcacctccattcaatccccaaatccaatattttttttcatcaaatcttgatccaaaatcattcaa 4979782  T
Q  108 gcat 111  Q
    ||||    
T  4979781 gcat 4979778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 13173413 - 13173476
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    |||||| |||||||||||||| |||||||||||| ||||||  |||||||||||| ||||||||    
T  13173413 atcaatccttgatccaaaatcattcaagcatcaagcataggaggtatcaacacacatttgacgt 13173476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 49566368 - 49566305
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  49566368 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 49566305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 9890102 - 9890239
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttc-cacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| |||||||||||||||  || |||||||| ||||  ||||| |||||         |||||| |||||||||||||| |||    
T  9890102 ccccctacacactattttcttcatcaacttcatttttcatctccattccaatccaaaaattcaatattttttcc-atcaatccttgatccaaaatcattc 9890200  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| |||| |  |||||||||||| ||||||||    
T  9890201 aagcatcaagcataagaggtatcaacacacatttgacgt 9890239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 3450044 - 3449908
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||||||||||||||   | |||| ||||| ||||| | ||||||||||         ||||| | ||| ||||||||| |||||    
T  3450044 ccccctacacactattttcatcatcaactttcataccacttccatccaatccccaaatccaatattttttttcatcaaattttgctccaaaatcattcaa 3449945  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||  |||| |  ||||||||||| |||||||||    
T  3449944 gcatcaggcataagaggtatcaacacatttttgacgt 3449908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 17139785 - 17139848
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||||| || ||||||||| ||||||  |||||||||||||||||||||    
T  17139785 atcaaatcttgctccaaaatcattgaagcatcaaccataggaggtatcaacacacttttgacgt 17139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 1087942 - 1088079
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| ||||||||||||||| ||  |||||||| ||||  ||| |||||||         ||||||  ||||||||||||| |||    
T  1087942 ccccctacacactattttcttcatcaacttcattttccttctccattccaatccaaaattccaatattttttcc-atcaatctttgatccaaaatcattc 1088040  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| |||||   |||||||||||| ||||||||    
T  1088041 aagcatcaagcatagaaggtatcaacacacatttgacgt 1088079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 24417298 - 24417247
Alignment:
Q  93 tccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| || ||||||||||||||||   ||||||||||||||||||||    
T  24417298 tccaaaatcattgaagcatcaaacataggagatatcaacacacttttgacgt 24417247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 51644379 - 51644328
Alignment:
Q  93 tccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| |||||||||||| |||| |  |||||||||||||||||||||    
T  51644379 tccaaaatcattcaagcatcaagcatatgaggtatcaacacacttttgacgt 51644328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 57; Significance: 4e-24; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 15786 - 15920
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||| | |||| |||||         ||||| ||||||||||||||| |||||    
T  15786 ccccctacatactattttcatcatcaacttcaataccacctccattcaatccccaaattcaata--ttttttcatcaaatcttgatccaaaatcattcaa 15883  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| |||| |  |||||||||||||||||||||    
T  15884 gcatcaagcataagaggtatcaacacacttttgacgt 15920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 55; Significance: 6e-23; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 1135 - 1011
Alignment:
Q  18 actattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcatcaaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||         ||||| | ||||||||||||  ||||||||||||  |    
T  1135 actattttcatcatcaacttcatttccacctccattcaatccctaaatccaata--ttttttcatcaaattttgatccaaaattattcaagcatcaagta 1038  T
Q  118 tagggtgtatcaacacacttttgacgt 144  Q
    ||||  |||||||||||||||||||||    
T  1037 taggtggtatcaacacacttttgacgt 1011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 52; Significance: 4e-21; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 5380 - 5486
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||| | ||||||||||         ||||| ||||||||||||||| |||||    
T  5380 ccccctacatactattttcatcatcaacttcaataccacctccattcaatccccaaatccaatattttttttcatcaaatcttgatccaaaatcattcaa 5479  T
Q  108 gcatcaa 114  Q
    |||||||    
T  5480 gcatcaa 5486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 965 - 1102
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||  |||||||||||         |||||| |||||||||||||| |||    
T  965 ccccctacacactattttcttcatcaacttcattttccatctccattccaatccaaaaatccaatattttttcc-atcaatccttgatccaaaatcattc 1063  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| ||||||  |||||||||||| ||||||||    
T  1064 aagcatcaagcataggaggtatcaacacacatttgacgt 1102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 50; Significance: 6e-20; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 50156 - 50289
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||||||| |          ||||||| ||||||||||||| |||||    
T  50156 ccccctacacactattttcttcatcaccttcatttccacttccattcaatcccaaaatccatt---ttttttaatcaatttttgatccaaaatcattcaa 50252  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    || |||| |||||   ||||||||||||| |||||||    
T  50253 gcgtcaagcatagaaggtatcaacacactattgacgt 50289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 17309 - 17180
Alignment:
Q  16 acactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaagcatca 113  Q
    ||||||||||| ||||||||||||||| ||| |||||||| |||| ||||||||||||         | |||| |||||||||||||| |||||||||||    
T  17309 acactattttcttcatcaacttcattttccatctccattccaatcccaaaatccaatattttttccaa-caatccttgatccaaaatcattcaagcatca 17211  T
Q  114 aacatagggtgtatcaacacacttttgacgt 144  Q
    | ||||||  |||||||||||||||||||||    
T  17210 agcataggaggtatcaacacacttttgacgt 17180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 45; Significance: 6e-17; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 7278 - 7144
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    |||||||||||||||||||||||||||||||  | |||  ||||| |||||   ||||||||||         ||||| ||||||||||||||| |||||    
T  7278 ccccctacacactattttcatcatcaacttccataccat-tccatccaatcctcaaatccaatatttttttc-atcaaatcttgatccaaaatcattcaa 7181  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||  |||||||||||||||||||||    
T  7180 gcatcaagcataggaggtatcaacacacttttgacgt 7144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 40; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 11934 - 11997
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||    
T  11934 atcaatttttgatccaaaatcattcaagcatcaagcataggaggtatcaacacactattgacgt 11997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 23135 - 23072
Alignment:
Q  81 atcaattcttgatccaaaatcgttcaagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||| ||||| ||||||||| |||||||||||| ||||||  |||||||||||||||||||||    
T  23135 atcaaatcttgctccaaaatcattcaagcatcaagcataggaggtatcaacacacttttgacgt 23072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 38; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 825 - 689
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcatttccacctccattcaatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttcaa 107  Q
    ||||||||||||||||||||||||||||||   | |||| ||||| ||||| | ||||||||||         ||||| | ||| ||||||||| |||||    
T  825 ccccctacacactattttcatcatcaactttcataccacttccatccaatccccaaatccaatattttttttcatcaaattttgctccaaaatcattcaa 726  T
Q  108 gcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||  |||| |  ||||||||||| |||||||||    
T  725 gcatcaggcataagaggtatcaacacatttttgacgt 689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 388 - 251
Alignment:
Q  8 ccccctacacactattttcatcatcaacttcattt-ccacctccattc-aatctcaaaatccaatannnnnnnnnatcaattcttgatccaaaatcgttc 105  Q
    ||||||||||||||||||| ||||||||||||||| ||  |||||||| ||||  ||| |||||||         ||||||  ||||||||||||| |||    
T  388 ccccctacacactattttcttcatcaacttcattttccttctccattccaatccaaaattccaatattttttcc-atcaatctttgatccaaaatcattc 290  T
Q  106 aagcatcaaacatagggtgtatcaacacacttttgacgt 144  Q
    ||||||||| |||||   |||||||||||| ||||||||    
T  289 aagcatcaagcatagaaggtatcaacacacatttgacgt 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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