View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4761-Insertion-7 (Length: 917)

Name: NF4761-Insertion-7
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4761-Insertion-7
NF4761-Insertion-7
[»] chr3 (18 HSPs)
chr3 (8-456)||(31402689-31403113)
chr3 (729-916)||(31402503-31402687)
chr3 (8-111)||(14548696-14548799)
chr3 (11-111)||(36646360-36646460)
chr3 (11-116)||(10540471-10540575)
chr3 (16-108)||(2923473-2923565)
chr3 (8-112)||(40880923-40881027)
chr3 (11-98)||(49465643-49465730)
chr3 (18-96)||(30923883-30923961)
chr3 (18-110)||(1816576-1816668)
chr3 (11-111)||(21574483-21574582)
chr3 (8-64)||(36338596-36338652)
chr3 (16-111)||(41724203-41724299)
chr3 (72-111)||(42753598-42753637)
chr3 (12-111)||(43115048-43115147)
chr3 (17-110)||(9279310-9279403)
chr3 (42-107)||(40122762-40122827)
chr3 (8-109)||(48588651-48588752)
[»] chr5 (20 HSPs)
chr5 (13-111)||(2880527-2880625)
chr5 (8-111)||(37526174-37526277)
chr5 (8-111)||(37588335-37588438)
chr5 (10-111)||(18704014-18704114)
chr5 (15-110)||(10272413-10272508)
chr5 (16-110)||(7674641-7674735)
chr5 (8-111)||(37690611-37690715)
chr5 (16-110)||(2568651-2568745)
chr5 (69-111)||(10391333-10391375)
chr5 (81-115)||(34245712-34245746)
chr5 (43-103)||(3947566-3947626)
chr5 (8-64)||(10125693-10125749)
chr5 (11-111)||(32172645-32172745)
chr5 (14-110)||(37794679-37794774)
chr5 (12-107)||(16889731-16889826)
chr5 (9-104)||(17368675-17368770)
chr5 (23-110)||(36318767-36318854)
chr5 (78-111)||(36539738-36539771)
chr5 (8-97)||(37611190-37611279)
chr5 (8-97)||(37787920-37788009)
[»] chr7 (12 HSPs)
chr7 (8-103)||(47427278-47427373)
chr7 (12-112)||(46281119-46281219)
chr7 (9-108)||(33645937-33646035)
chr7 (11-115)||(48157098-48157202)
chr7 (49-111)||(39505948-39506010)
chr7 (14-94)||(12234870-12234950)
chr7 (11-107)||(20553099-20553195)
chr7 (8-64)||(36598331-36598387)
chr7 (11-111)||(46082026-46082128)
chr7 (16-110)||(3610723-3610817)
chr7 (17-111)||(38010706-38010800)
chr7 (37-110)||(2825235-2825308)
[»] chr4 (11 HSPs)
chr4 (16-110)||(6978945-6979039)
chr4 (23-110)||(6466036-6466123)
chr4 (8-111)||(2996565-2996668)
chr4 (16-107)||(24370934-24371027)
chr4 (8-93)||(27123327-27123412)
chr4 (35-110)||(7694012-7694087)
chr4 (13-103)||(1965941-1966031)
chr4 (17-107)||(24929489-24929579)
chr4 (9-111)||(30207547-30207649)
chr4 (20-89)||(27124131-27124200)
chr4 (11-64)||(50471223-50471276)
[»] chr2 (13 HSPs)
chr2 (16-110)||(40158711-40158805)
chr2 (11-97)||(15120189-15120275)
chr2 (11-111)||(1742010-1742110)
chr2 (35-111)||(39983334-39983410)
chr2 (11-54)||(4550796-4550839)
chr2 (8-108)||(33942145-33942247)
chr2 (17-111)||(22681169-22681263)
chr2 (50-111)||(6993741-6993802)
chr2 (51-115)||(7103500-7103565)
chr2 (11-64)||(14316123-14316176)
chr2 (68-109)||(33502703-33502744)
chr2 (81-110)||(35485910-35485939)
chr2 (12-93)||(41809224-41809305)
[»] chr6 (15 HSPs)
chr6 (11-111)||(281826-281926)
chr6 (13-111)||(2117395-2117493)
chr6 (12-111)||(4006706-4006805)
chr6 (8-93)||(2460126-2460211)
chr6 (71-111)||(2727894-2727934)
chr6 (11-111)||(30523652-30523751)
chr6 (12-111)||(7148658-7148757)
chr6 (8-54)||(740861-740907)
chr6 (8-90)||(29957897-29957979)
chr6 (10-64)||(33832250-33832304)
chr6 (81-110)||(415297-415326)
chr6 (8-64)||(2455298-2455355)
chr6 (20-89)||(2460930-2460999)
chr6 (11-64)||(22743520-22743573)
chr6 (8-93)||(34538193-34538278)
[»] chr1 (16 HSPs)
chr1 (8-100)||(15437966-15438058)
chr1 (12-111)||(15581246-15581345)
chr1 (44-111)||(25005808-25005875)
chr1 (12-95)||(43722137-43722220)
chr1 (16-110)||(3924617-3924711)
chr1 (13-111)||(25479573-25479671)
chr1 (11-108)||(1662568-1662665)
chr1 (23-111)||(3224415-3224503)
chr1 (8-64)||(4481969-4482025)
chr1 (43-111)||(42556641-42556709)
chr1 (8-103)||(23407431-23407526)
chr1 (8-103)||(27140478-27140573)
chr1 (11-94)||(43029380-43029463)
chr1 (11-76)||(6976952-6977016)
chr1 (12-89)||(11639395-11639472)
chr1 (24-101)||(27963361-27963438)
[»] chr8 (18 HSPs)
chr8 (8-111)||(6509278-6509381)
chr8 (11-101)||(26473730-26473820)
chr8 (10-111)||(11415146-11415247)
chr8 (58-111)||(44865589-44865642)
chr8 (8-64)||(5069736-5069792)
chr8 (8-103)||(8060669-8060764)
chr8 (12-103)||(10079049-10079140)
chr8 (11-94)||(26479794-26479877)
chr8 (51-110)||(28769357-28769416)
chr8 (30-96)||(8536039-8536105)
chr8 (12-86)||(24258083-24258157)
chr8 (67-109)||(29973075-29973117)
chr8 (8-54)||(30987966-30988012)
chr8 (70-108)||(34770887-34770925)
chr8 (17-107)||(39551193-39551283)
chr8 (10-111)||(11183537-11183638)
chr8 (10-103)||(11569434-11569527)
chr8 (8-101)||(27645906-27645999)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-100)||(306329-306414)
[»] scaffold0608 (1 HSPs)
scaffold0608 (8-64)||(9612-9668)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 456
Target Start/End: Complemental strand, 31403113 - 31402689
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||                    ||    
T  31403113 tgagagagcttatggaaacaacttattacatgtctataaggtattttaagcttagttagataaactctctagaatagc--------------------tt 31403034  T
Q  108 atattaaataagcctgagtttagttaaacttttattttagaaataactcataactaaacacttataaaagcccataattgannnnnnnnnaatccaaaag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |  | |||||    
T  31403033 atattaaataagcctgagtttagttaaacttttattttagaaataactcataactaaacacttataaaagcccataattgattttttttaatccaaaaag 31402934  T
Q  208 cacatgccttcaccactcacgaccgatgacacacttataagcaagttttcataagttgtttgagagagtttatggtttcaattgatgaattttggtcatg 307  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31402933 cacataccttcaccactcacgaccaatgacacacttataagcaagttttcataagttgtttgagagagtttatggtttcaattgatgaattttggtcatg 31402834  T
Q  308 aaaatgatttctcacgtgctctatctatgtagatgattttcttgtacaagttccaaattcaccttacaaagaataaatattggtaaatctgctttataca 407  Q
    |||||||||||||| |||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31402833 aaaatgatttctcatgtgctctat----gtagatgattttcttgtacaagttccaaattcaccttacaaagaataaatattggtaaatctgctttataca 31402738  T
Q  408 cagattattgatctgctagcaccctccctttacatagtctggcttccct 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31402737 cagattattgatctgctagcaccctccctttacatagtctggcttccct 31402689  T

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Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 729 - 916
Target Start/End: Complemental strand, 31402687 - 31402503
Alignment:
Q  729 tttaagtcaaatatactcttgacattgaagaagtgcttcgacaagaaaagtccacacgttgaatatatgatagtattgcattttcttgacttcattggca 828  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  31402687 tttaagtcaaatatactcttcacattgaagaagtgcttcgacaagaaaagtccacacgttgaatatatgata---ttgcattttcttgacttcattggca 31402591  T
Q  829 attaatcttcaagatttttaaacactgggttgaaactttttacttaaaacataaaactctgcaattgagttccaaatattttctgttg 916  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31402590 attaatcttcaagatttttaaacactgggttgaaactttttacttaaaacataaaactctgcaattgagttccaaatattttttgttg 31402503  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 14548696 - 14548799
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    |||||||||||||| ||||||| ||| |||| || ||| | | |||| |||||||||  |||| ||||| |||||| ||||| |||||||||||||||||    
T  14548696 tgagagagcttatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagctt 14548795  T
Q  108 atat 111  Q
    ||||    
T  14548796 atat 14548799  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 36646360 - 36646460
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||||||||||||| ||||||  |||||  ||||| | |||| | |||||||  ||||||||||||| ||||||||| ||||||| ||||| ||||||    
T  36646360 gagagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttatgaaaacaagttataacttata 36646459  T
Q  111 t 111  Q
    |    
T  36646460 t 36646460  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 10540471 - 10540575
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||||||||||||||| |||| ||||||||| ||  | |||| || ||||||  | || ||||||| |||||||||| |||||||||||||| |||||    
T  10540471 gagagcttatggaaacaatttatgacatgtttacaatttttttttaggttattttcacaacctctcta-aatagcttatgaaaacaacttatagtttata 10540569  T
Q  111 ttaaat 116  Q
    | ||||    
T  10540570 taaaat 10540575  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 2923565 - 2923473
Alignment:
Q  16 cttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctta 108  Q
    ||||| ||||||||||| |||||||  ||||| |||||| |||||||||| |||| ||||  ||  |||||||| |||||| |||||||||||    
T  2923565 cttatagaaacaacttactacatgtccataagttatttttagcttatttatataatctcttcagtgtagcttatgaaaacagcttatagctta 2923473  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 40880923 - 40881027
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    |||||||||||||| ||||||||||| |||||    |||| | |||||| |||||||  ||||  ||||||| |||| |||| ||||||| |||||||||    
T  40880923 tgagagagcttatgaaaacaacttatgacatgaccgtaagttgttttaaacttatttttataacttctctaggatagtttatgaaaacaatttatagctt 40881022  T
Q  108 atatt 112  Q
    |||||    
T  40881023 atatt 40881027  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 49465643 - 49465730
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaac 98  Q
    |||| |||||| ||||| ||||||||||||| || |||| ||||||||||||||  ||||  |||| || ||||||||| ||||||||    
T  49465643 gagaacttatgaaaacagcttattacatgttcattaggttttttaagcttatttccataagttctccagtatagcttatgaaaacaac 49465730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 30923883 - 30923961
Alignment:
Q  18 tatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaaca 96  Q
    |||||||||| ||||| |||||| |||||| | |||| |||||||||  ||||||||||||| |||| |||| ||||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaaaca 30923961  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 1816668 - 1816576
Alignment:
Q  18 tatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||| ||| ||||||| |||| || ||| | | |||| ||||||||| ||||| ||||| || ||||||||| ||||||||||||| ||||||    
T  1816668 tatgaaaataacttatgacattttcataggctgttttcagcttattttgataagctctccagtatagcttatgaaaacaacttatatcttata 1816576  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 21574582 - 21574483
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    ||||||||||| ||||||||||| ||||||| ||||| |  ||| |||||||||  |||| ||||| |   ||||||||||||| || ||||||||||||    
T  21574582 gagagcttatgaaaacaacttatgacatgttcataagctgcttttagcttatttccataagctctccatgttagcttataaaaa-aagttatagcttata 21574484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 36338652 - 36338596
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttattt 64  Q
    |||||||||||| | ||||| ||||| ||||||||||||| ||||||| ||||||||    
T  36338652 tgagagagcttacgaaaacagcttatgacatgtttataagatattttatgcttattt 36338596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 41724299 - 41724203
Alignment:
Q  16 cttatggaaacaacttattacatgtttataaggtattttaagctta-tttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||||||||||||||||| ||||||  ||||| | |||| |||||| |||| |||| ||||| || |||||| || ||||||  |||||||||||||    
T  41724299 cttatggaaacaacttatgacatgtccataagttgttttcagcttattttatataagctctcaaggatagctgatgaaaacagtttatagcttatat 41724203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 42753637 - 42753598
Alignment:
Q  72 ctctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  42753637 ctctctaggatagcttgtaaaaacaacttatagcttatat 42753598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 43115147 - 43115048
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||| ||||||||||||||||| ||||||  ||||  | |||| |||||||||  |||| ||||| |  |||| | || |||||||||||||||||||||    
T  43115147 agagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctcaatgatagttcatgaaaacaacttatagcttatat 43115048  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 9279310 - 9279403
Alignment:
Q  17 ttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    ||||||||||| ||||| |||||| |||||| | |||| |||||||||   ||||||||  |  |||| |||| |||||||| |||||||||||    
T  9279310 ttatggaaacagcttataacatgtatataagctgttttcagcttatttccttaaactcttcatgatagtttatgaaaacaacatatagcttata 9279403  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 40122762 - 40122827
Alignment:
Q  42 tataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    |||||| | |||| |||||||||  || |||| | ||| |||||||||||||||||||||||||||    
T  40122762 tataagttgtttttagcttatttccattaactttttaggatagcttataaaaacaacttatagctt 40122827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 48588752 - 48588651
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    |||||||||||||  ||||||||||| |||||||  ||| || |||| |||| ||||  | ||||||||    || |||||| |||||||||||||||||    
T  48588752 tgagagagcttatataaacaacttatgacatgttcttaaagtgttttcagctaatttccacaaactctccgttatggcttattaaaacaacttatagctt 48588653  T
Q  108 at 109  Q
    ||    
T  48588652 at 48588651  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 2880527 - 2880625
Alignment:
Q  13 gagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    ||||||||||||||| || || | ||||| ||||||| |||| |||||||||  |||||||||   |||||||||||||||||||||||||| ||||||    
T  2880527 gagcttatggaaacagctaatgatatgttcataaggtgttttcagcttatttccataaactcttctgaatagcttataaaaacaacttatagattatat 2880625  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 37526174 - 37526277
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    |||||||||||||| | ||||| ||| ||||||| ||||| | |||| |||||||||  |||| ||||| |||| | ||||| |||||||||||||||||    
T  37526174 tgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctctccagaacaacttatgaaaacaacttatagctt 37526273  T
Q  108 atat 111  Q
    ||||    
T  37526274 atat 37526277  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 37588335 - 37588438
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    |||||||||||||| | ||||| ||| | ||||| ||||| | |||| |||||||||  |||| ||||| |||||| ||||| |||||||||||||||||    
T  37588335 tgagagagcttatgaatacaacctatgaaatgttaataagctgttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagctt 37588434  T
Q  108 atat 111  Q
    ||||    
T  37588435 atat 37588438  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 18704014 - 18704114
Alignment:
Q  10 agagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttat 109  Q
    |||||||||||| ||||||||||| |||||| |||||| | |||| |||||||||  ||||  ||| |  |||||||||| |||||||||||||||||||    
T  18704014 agagagcttatg-aaacaacttataacatgtctataagttgttttcagcttatttccataagatctttgtaatagcttatgaaaacaacttatagcttat 18704112  T
Q  110 at 111  Q
    ||    
T  18704113 at 18704114  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 10272413 - 10272508
Alignment:
Q  15 gcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||| |||||||||||| |||||| | |||| | |||| |||||||||  |||||||||| |  || |||||| ||||||||||||||||||||    
T  10272413 gcttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagcttata 10272508  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 7674735 - 7674641
Alignment:
Q  16 cttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||||||||||||||| ||||||||||||||| |||| |||||||||  | ||| |||| |  ||||||||| ||||||  |||| |||||||    
T  7674735 cttatggaaacaacttatgacatgtttataaggtgttttcagcttattttcacaaattctccaagatagcttatgaaaacattttatggcttata 7674641  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 37690611 - 37690715
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagc-ttataaaaacaacttatagct 106  Q
    |||||||||||||| | ||||| ||| ||||||| ||||| | |||| |||||||||  |||| ||||| | |||| | |||| ||||||||||||||||    
T  37690611 tgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctctccataataactttatgaaaacaacttatagct 37690710  T
Q  107 tatat 111  Q
    |||||    
T  37690711 tatat 37690715  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 2568745 - 2568651
Alignment:
Q  16 cttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||| ||||| ||||| |||| || ||||| |||||| |||||||||  || | ||||| |  ||||||||| ||||||||||||||||||||    
T  2568745 cttatgaaaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagcttata 2568651  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 10391375 - 10391333
Alignment:
Q  69 aaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  10391375 aaactctctaggatagcttataaaaacaaattatagcttatat 10391333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 34245746 - 34245712
Alignment:
Q  81 atagcttataaaaacaacttatagcttatattaaa 115  Q
    |||||||||||||||||||||||||||||||||||    
T  34245746 atagcttataaaaacaacttatagcttatattaaa 34245712  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 3947566 - 3947626
Alignment:
Q  43 ataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttata 103  Q
    ||||||| |||| |||||||||  |||| ||| ||||||||||||||||||||| ||||||    
T  3947566 ataaggtgtttttagcttattttcataatctcgctagaatagcttataaaaacagcttata 3947626  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 10125693 - 10125749
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttattt 64  Q
    ||||||| |||||| ||||||||||| ||||||| ||||||| |||| |||||||||    
T  10125693 tgagagaacttatgtaaacaacttatgacatgttgataaggtgttttcagcttattt 10125749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 32172745 - 32172645
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    ||||||||||||||||||||||| ||||||  |||||  ||||| |||||||||  || |  |||  |  ||||||||| |||||| |||||||||||||    
T  32172745 gagagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatgaaaacagcttatagcttata 32172646  T
Q  111 t 111  Q
    |    
T  32172645 t 32172645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 37794679 - 37794774
Alignment:
Q  14 agcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||||| ||||||||||| ||||||| ||||| | |||| ||||||||| ||| |||||| ||| |||||| || |||| ||  |||||||||||    
T  37794679 agcttatgaaaacaacttatgacatgttcataagctgttttgagcttatttcgat-aactctataggatagctcatgaaaataatctatagcttata 37794774  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 16889826 - 16889731
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    |||| ||||| ||||| |||||   |||| |||||| | |||| || ||||||  ||||||||||||| ||||||||| |||||| ||||||||||    
T  16889826 agagattatgaaaacagcttatactatgtctataagttgttttcagattatttccataaactctctagcatagcttatgaaaacagcttatagctt 16889731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 17368770 - 17368675
Alignment:
Q  9 gagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatag 104  Q
    |||||| |||||| ||||||||||| ||||||| ||| |   |||| |||||||||  |||| ||||| |  ||||||||| ||||||||||||||    
T  17368770 gagagaacttatgaaaacaacttatgacatgttcatatgcagttttcagcttatttccataacctctccaagatagcttatgaaaacaacttatag 17368675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 36318854 - 36318767
Alignment:
Q  23 aaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||||||||||||| ||  |||| | |||| |||||||||| ||||| |||| |  ||||||||| ||||||||||| | ||||||    
T  36318854 aaacaacttattacatcttgttaagctgttttcagcttatttacataaattctccaagatagcttatgaaaacaacttaaaacttata 36318767  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 36539771 - 36539738
Alignment:
Q  78 agaatagcttataaaaacaacttatagcttatat 111  Q
    |||||| |||||||||||||||||||||||||||    
T  36539771 agaataacttataaaaacaacttatagcttatat 36539738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 37611190 - 37611279
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaa 97  Q
    |||||||||||||| ||||||||| | ||||||| ||||| | |||| || ||||||  |||| ||||| |  ||||||||| |||||||    
T  37611190 tgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaa 37611279  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 37787920 - 37788009
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaa 97  Q
    |||||||||||||| ||||||||| | ||||||| ||||| | |||| || ||||||  |||| ||||| |  ||||||||| |||||||    
T  37787920 tgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaa 37788009  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 47427278 - 47427373
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttata 103  Q
    |||||||||||||||||||||||||| |||| | |||||| ||||| ||||||||||   ||||||||| ||||||| |||| |||| | ||||||    
T  47427278 tgagagagcttatggaaacaacttatgacatctctataagctatttcaagcttatttttttaaactctcaagaatagtttatgaaaatagcttata 47427373  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 46281119 - 46281219
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||| ||| |||||||||||||  ||||| |||||  | |||| |||||||||| |||| | ||| ||||||||||||||||||| |||||||| |||||    
T  46281119 agagtttacggaaacaacttatgccatgtctataaattgttttcagcttatttatataagccctccagaatagcttataaaaacagcttatagcctatat 46281218  T
Q  112 t 112  Q
    |    
T  46281219 t 46281219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 33645937 - 33646035
Alignment:
Q  9 gagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctta 108  Q
    ||||||||||||||||||||||||| |||||| |||||| | |||| || ||||||  |||| ||||| || ||||||||| ||||||  ||||||||||    
T  33645937 gagagagcttatggaaacaacttatgacatgtctataagttgtttttaggttatttccataagctctccag-atagcttatgaaaacagtttatagctta 33646035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 48157098 - 48157202
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||||||| ||||||||||||  |||||  ||||| | |||| |||||||||  ||||  ||||  ||||||||| | ||||||| ||||||||||||    
T  48157098 gagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataagatctcccgaatagcttgtgaaaacaaattatagcttata 48157197  T
Q  111 ttaaa 115  Q
    |||||    
T  48157198 ttaaa 48157202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 39506010 - 39505948
Alignment:
Q  49 tattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||||| |||||||||  |||||||||| |||||||||||| |||||||||||  ||||||||    
T  39506010 tattttcagcttatttccataaactctccagaatagcttatgaaaacaacttaatgcttatat 39505948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 12234870 - 12234950
Alignment:
Q  14 agcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaa 94  Q
    ||||||| |||||||||||| |||||| |||||| | |||| |||||||||  |||| |||||||| | |||| |||||||    
T  12234870 agcttatagaaacaacttatgacatgtctataagctgttttcagcttatttccataagctctctaggaaagctcataaaaa 12234950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 20553195 - 20553099
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    ||||||||||||||||| ||||  ||||||| ||||| | |||| || ||||||  |||| ||| |||| ||| ||| | |||||||||||||||||    
T  20553195 gagagcttatggaaacagcttacgacatgttcataagttgttttcagattatttccataagctcactaggataacttgtgaaaacaacttatagctt 20553099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 36598331 - 36598387
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttattt 64  Q
    |||||||||||||||||||| ||||| ||||||| ||||| | |||| |||||||||    
T  36598331 tgagagagcttatggaaacatcttatgacatgttcataagctgttttcagcttattt 36598387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 46082128 - 46082026
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagc--ttataaaaacaacttatagctta 108  Q
    ||||||||||| ||||||||||| |||||   ||||| | |||| |||||||||  |||| ||||| ||||||||   ||| ||||||||||||| ||||    
T  46082128 gagagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctctccagaatagcgtctatgaaaacaacttataactta 46082029  T
Q  109 tat 111  Q
    |||    
T  46082028 tat 46082026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 3610723 - 3610817
Alignment:
Q  16 cttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||||||||| || || ||||||  |||||   |||| |||||||||  |||| |||||||| |||| |||  ||||||||||||||||||||    
T  3610723 cttatggaaacagctaatgacatgtccataagcctttttcagcttatttctataagctctctaggatagtttacgaaaacaacttatagcttata 3610817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 38010800 - 38010706
Alignment:
Q  17 ttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    ||||| |||||||  || ||||||| ||||| | |||| |||||||||  ||||  ||||||| |||| |||| |||||| ||||||||||||||    
T  38010800 ttatgaaaacaacaaataacatgttcataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatat 38010706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 2825235 - 2825308
Alignment:
Q  37 atgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    ||||| ||||| |||||| |||||||||  ||||  ||||||| ||||||| | |||||||||||||| |||||    
T  2825235 atgttcataagttattttcagcttatttccataagttctctaggatagcttgtgaaaacaacttatagtttata 2825308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 6978945 - 6979039
Alignment:
Q  16 cttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    ||||| |||| ||||||| |||||| |||||| | |||| |||||||||  ||||||||| ||| || |||||||||||||||||||||| ||||    
T  6978945 cttattgaaataacttatgacatgtctataagctgttttcagcttattttcataaactctttaggatggcttataaaaacaacttatagcatata 6979039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 6466036 - 6466123
Alignment:
Q  23 aaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    ||||||||||| | ||||| ||||| |||||| | |||||||  |||| ||||||||||||||||||  ||||||||||||| |||||    
T  6466036 aaacaacttatgagatgttcataagctattttcaacttatttccataatctctctagaatagcttatggaaacaacttatagattata 6466123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 2996668 - 2996565
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    |||||||||||||| ||||||||||| ||||||  ||||| | |||| | |||||||  |||  ||||| |  ||||||||| ||||||||||||| |||    
T  2996668 tgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataactt 2996569  T
Q  108 atat 111  Q
    ||||    
T  2996568 atat 2996565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 24370934 - 24371027
Alignment:
Q  16 cttatggaaacaacttattacatgttta--taaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    |||||||||||||||||| |||||| ||  ||||   |||| |||||||||  ||||||| | ||| ||||||||| |||||||||||||||||    
T  24370934 cttatggaaacaacttatgacatgtatacataagccgttttcagcttatttctataaactatttaggatagcttatgaaaacaacttatagctt 24371027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 27123327 - 27123412
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaa 93  Q
    |||||||||||||||||||||||||| |||||| | |||| | |||| | |||||||  |||| ||||| | ||||||||| ||||    
T  27123327 tgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagcttacaaaa 27123412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 7694012 - 7694087
Alignment:
Q  35 acatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    ||||||| ||||| | |||| |||||||||  |||||||||| || ||| ||||| |||||| |||||||||||||    
T  7694012 acatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagcttata 7694087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 1966031 - 1965941
Alignment:
Q  13 gagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttata 103  Q
    ||||||||| ||||||||||| ||||||| ||||| | |||| | |||||||  | ||  | ||||| |||||||||||||| ||||||||    
T  1966031 gagcttatgaaaacaacttatgacatgttcataagctgtttttaacttatttccagaagatttctaggatagcttataaaaataacttata 1965941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 24929579 - 24929489
Alignment:
Q  17 ttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    ||||||||||| |||||  |||||| ||||  | |||| |||||||||  |||| |||||||| | || |||| |||||||||||||||||    
T  24929579 ttatggaaacagcttatggcatgttcataaattgttttcagcttatttccataagctctctagtagagtttatgaaaacaacttatagctt 24929489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 30207547 - 30207649
Alignment:
Q  9 gagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctta 108  Q
    ||||||||||||   |||| | ||| |||||| | |||| | |||| |||||||||  |||| |||||||   |||||||| ||||||||||||||||||    
T  30207547 gagagagcttataagaacagcatatgacatgtctgtaagctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagctta 30207646  T
Q  109 tat 111  Q
    |||    
T  30207647 tat 30207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 27124131 - 27124200
Alignment:
Q  20 tggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttat 89  Q
    ||||||||||||||||||||| |||||| |||||| |  ||||||  | ||||||||||| || ||||||    
T  27124131 tggaaacaacttattacatgtctataagctattttcaatttattttcacaaactctctagcatggcttat 27124200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 50471223 - 50471276
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttattt 64  Q
    ||||||||||| ||||||||||| ||||  ||||||| |||||| |||||||||    
T  50471223 gagagcttatgtaaacaacttatgacatagttataagctatttttagcttattt 50471276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 40158805 - 40158711
Alignment:
Q  16 cttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||| ||||| ||||| ||||||||||||| | |||| |||||| ||| |||| ||||| |||||| ||||| |||||||||||| |||||||    
T  40158805 cttatgaaaacagcttatgacatgtttataagttgttttcagcttaattacataagctctccagaataacttatgaaaacaacttattgcttata 40158711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 15120275 - 15120189
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaa 97  Q
    ||||||||||||||||||||||| ||||||| || || | |||||||||||||| ||||| ||||| |  ||||||||  |||||||    
T  15120275 gagagcttatggaaacaacttatgacatgttcattagctgttttaagcttattttgataagctctccatgatagcttacgaaaacaa 15120189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 1742010 - 1742110
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    ||||||||||||||||||||||| ||||||  ||||| ||| || | |||||||  |||||||||  |  |||| |||| |||||| |||||| ||||||    
T  1742010 gagagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactcttcatgatagattatgaaaacagcttatatcttata 1742109  T
Q  111 t 111  Q
    |    
T  1742110 t 1742110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 39983410 - 39983334
Alignment:
Q  35 acatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||||| |||||| |||||| || ||||||  || | ||||| || ||||||||| |||||||||||||||||||||    
T  39983410 acatgtctataagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttatagcttatat 39983334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 4550839 - 4550796
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtatttt 54  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||    
T  4550839 gagagcttatggaaacaacttatgacatgttcataagctatttt 4550796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 33942247 - 33942145
Alignment:
Q  8 tgagagagcttatggaaa--caacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagc 105  Q
    |||||||||||||||| |  |||||||| ||||||| ||||| | |||| |||| ||||  || | |||||||  || |||||| |||||||||||||||    
T  33942247 tgagagagcttatggagagacaacttatgacatgttcataagctgttttcagctaattttcattagctctctatgatggcttatgaaaacaacttatagc 33942148  T
Q  106 tta 108  Q
    |||    
T  33942147 tta 33942145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 22681169 - 22681263
Alignment:
Q  17 ttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    ||||| |||||||  || ||||||| ||||| | |||| |||||||||  ||||  ||||||| |||| |||| |||||| ||||||||||||||    
T  22681169 ttatgaaaacaacaaataacatgttcataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatat 22681263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 6993741 - 6993802
Alignment:
Q  50 attttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    ||||| |||||||||  |||| ||||| || ||||||||| |||||||| ||||||||||||    
T  6993741 atttttagcttattttcataagctctcaagcatagcttatgaaaacaacctatagcttatat 6993802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 7103500 - 7103565
Alignment:
Q  51 ttttaagcttatttagataaactctctagaatagcttat-aaaaacaacttatagcttatattaaa 115  Q
    |||| |||||||||  | ||||||||||  ||||||||| ||||||| ||||||||||||||||||    
T  7103500 tttttagcttattttcacaaactctctaagatagcttatgaaaaacagcttatagcttatattaaa 7103565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 14316123 - 14316176
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttattt 64  Q
    ||||||||||||||||||||||| |||| | |||||| | |||| |||||||||    
T  14316123 gagagcttatggaaacaacttatgacatatgtataagctgttttcagcttattt 14316176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 33502744 - 33502703
Alignment:
Q  68 taaactctctagaatagcttataaaaacaacttatagcttat 109  Q
    |||||||||||| ||| |||||||||||| ||||||||||||    
T  33502744 taaactctctaggataacttataaaaacagcttatagcttat 33502703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 110
Target Start/End: Complemental strand, 35485939 - 35485910
Alignment:
Q  81 atagcttataaaaacaacttatagcttata 110  Q
    ||||||||||||||||||||||||||||||    
T  35485939 atagcttataaaaacaacttatagcttata 35485910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 41809224 - 41809305
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaa 93  Q
    ||||||| |||||||||||||| ||||||| ||||| | |||| |||||||||  |||| || ||||  ||||||| |||||    
T  41809224 agagcttgtggaaacaacttatgacatgttcataagttgtttttagcttatttccataagctttctaagatagcttgtaaaa 41809305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 281826 - 281926
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    ||||||| |||||| |||||||| |||||| |||||| | |||| |||||||||  || | |||||||| ||||||||| || ||| |||||||||||||    
T  281826 gagagctaatggaagcaacttatgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagcttata 281925  T
Q  111 t 111  Q
    |    
T  281926 t 281926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 2117493 - 2117395
Alignment:
Q  13 gagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||||||| ||||||| ||||  ||||| |||||| | |||| |||||||||  |||| |||||||| ||| ||||| |||||||||||||| ||||||    
T  2117493 gagcttatagaaacaatttatggcatgtctataagctgtttttagcttatttcaataagctctctaggataacttatgaaaacaacttatagattatat 2117395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 4006805 - 4006706
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    ||||||| || ||||||||||  | ||||  ||||| |||||| |||||||||  |||| |||||  | ||||||||| |||||||||||||||||||||    
T  4006805 agagcttgtgaaaacaacttacgatatgtccataagttattttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatat 4006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 2460126 - 2460211
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaa 93  Q
    |||||||||||||||||||||||||| |||||| | |||| | |||| | |||||||  |||| ||||| | ||||||||| ||||    
T  2460126 tgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagcttacaaaa 2460211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 2727894 - 2727934
Alignment:
Q  71 actctctagaatagcttataaaaacaacttatagcttatat 111  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  2727894 actctctaggatagcttatgaaaacaacttatagcttatat 2727934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 30523751 - 30523652
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||| ||||||||||||||||||  |||||| ||||| | |||| | || ||||  |||| ||||| || ||||||||| |||| |||||||||||||||    
T  30523751 gagatcttatggaaacaacttatgccatgttcataagctgttttcaactaatttctataacctctcaaggatagcttatgaaaa-aacttatagcttata 30523653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 7148757 - 7148658
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||||||| ||||||||||||| || |||  ||||| |||||| | |||||||  |||| ||||| ||  |||||||| |||| | ||||||||||||||    
T  7148757 agagcttacggaaacaacttatgacttgtccataagctattttcaacttattttcataagctctccagggtagcttattaaaataccttatagcttatat 7148658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 740861 - 740907
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtatttt 54  Q
    ||||||||||| |||||||||||||| ||||||| ||||| ||||||    
T  740861 tgagagagcttgtggaaacaacttatgacatgttcataagttatttt 740907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 29957897 - 29957979
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttata 90  Q
    ||||||||||||||| ||  ||| || ||||||| || |  |||||| |||||||||  |||| |||||||||||||||||||    
T  29957897 tgagagagcttatgggaaatactcatgacatgttcatgatctattttcagcttatttccataagctctctagaatagcttata 29957979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 33832250 - 33832304
Alignment:
Q  10 agagagcttatggaaacaacttattacatgtttataaggtattttaagcttattt 64  Q
    ||||| |||||| ||||||||||| ||||||||||||| | |||| |||||||||    
T  33832250 agagaacttatgaaaacaacttatgacatgtttataagttgtttttagcttattt 33832304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 110
Target Start/End: Complemental strand, 415326 - 415297
Alignment:
Q  81 atagcttataaaaacaacttatagcttata 110  Q
    ||||||||||||||||||||||||||||||    
T  415326 atagcttataaaaacaacttatagcttata 415297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 2455355 - 2455298
Alignment:
Q  8 tgagagagcttatggaaacaacttattaca-tgtttataaggtattttaagcttattt 64  Q
    ||||||| |||||| ||||||||||||||| |||||||||| | |||| |||||||||    
T  2455355 tgagagaacttatgaaaacaacttattacattgtttataagttgttttcagcttattt 2455298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 2460930 - 2460999
Alignment:
Q  20 tggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttat 89  Q
    ||||||||||||||||||||| |||||| |||||| |  ||||||  | ||||||||||| || ||||||    
T  2460930 tggaaacaacttattacatgtctataagctattttcaatttattttcacaaactctctagcatggcttat 2460999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 22743573 - 22743520
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttattt 64  Q
    ||||||| ||| ||||||||||||||||||| ||||| | |||| |||||||||    
T  22743573 gagagctcatgaaaacaacttattacatgttcataagctgttttcagcttattt 22743520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 34538193 - 34538278
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaa 93  Q
    ||||||| |||||  ||||| ||||  ||||||  ||||  |||||| |||||||||| | ||||||||||| |||||||||||||    
T  34538193 tgagagatcttataaaaacagcttacgacatgtccataaactattttcagcttatttatacaaactctctaggatagcttataaaa 34538278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 15438058 - 15437966
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaactt 100  Q
    |||||||| ||||||||||||||||| ||||||| ||||| || ||| |||||||||   ||||||||| || ||||| ||| ||||||||||    
T  15438058 tgagagaggttatggaaacaacttatgacatgttcataagttactttcagcttatttccgtaaactctcgaggatagcctatgaaaacaactt 15437966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 15581345 - 15581246
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||||| ||||||||||||||| |||||| |||||| | |||| ||| |||||  |||| | |||||| ||| |||||||||| | ||||||||||||||    
T  15581345 agagctaatggaaacaacttatgacatgtctataagctgttttcagcctatttctataagccctctagcataccttataaaaaaagcttatagcttatat 15581246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 25005808 - 25005875
Alignment:
Q  44 taaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||| |||||||||||| |||  |||| ||||| || ||||||||| |||||||||||||||||||||    
T  25005808 taagatattttaagcttgtttttataagctctccaggatagcttatgaaaacaacttatagcttatat 25005875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 43722137 - 43722220
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaac 95  Q
    |||||||| ||||||||||||  ||||||||||||| | || | || ||||||  |||| |||||||||||||||||| |||||    
T  43722137 agagcttacggaaacaacttacgacatgtttataagcttttctcagtttattttaataagctctctagaatagcttatgaaaac 43722220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 3924711 - 3924617
Alignment:
Q  16 cttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||||| |||||| |||| | ||||||||||| | ||||  ||||||||  |||||||||  || ||||||||||||||||||| |||| |||||    
T  3924711 cttatgaaaacaatttatgaaatgtttataagttgttttcggcttatttccataaactcttcaggatagcttataaaaacaactaatagattata 3924617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 25479671 - 25479573
Alignment:
Q  13 gagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    ||||||||| ||| |  |||| ||||||| || || | |||| |||||||||  |||| |||||||| ||||||||| ||||||||||||||| |||||    
T  25479671 gagcttatgaaaatagattatgacatgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagcctatat 25479573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 1662665 - 1662568
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctta 108  Q
    ||||||||| ||||||||||||| ||||||  ||||  |||||| || ||||||  |||| ||||| ||||| ||||||||||||  || ||||||||    
T  1662665 gagagcttacggaaacaacttatgacatgtccataaaatatttttagtttattttcataagctctccagaattgcttataaaaaccgctaatagctta 1662568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 3224503 - 3224415
Alignment:
Q  23 aaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||| |||||| ||||||  ||||| | || | |||||||||  ||||  |||||||||||||||||||||||| | ||||||||||||    
T  3224503 aaactacttatgacatgtccataagttgttctcagcttattttcataagttctctagaatagcttataaaaacaccctatagcttatat 3224415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 4482025 - 4481969
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttattt 64  Q
    ||||||| |||||| ||||||||||||||||||| ||||| | |||| |||||||||    
T  4482025 tgagagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattt 4481969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 42556641 - 42556709
Alignment:
Q  43 ataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    ||||| |||||| || ||||| | |||||||||| |  ||||||||| |||||||||||||||||||||    
T  42556641 ataagttattttcagtttattgatataaactctccatgatagcttatgaaaacaacttatagcttatat 42556709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 23407526 - 23407431
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttata 103  Q
    ||||||||||||| |||| | ||||| ||||||  ||| | ||| || | |||| || |||||||||||||||||| ||||| |||||| ||||||    
T  23407526 tgagagagcttattgaaatagcttatgacatgtccataggctatgttcaacttaatttgataaactctctagaataacttatgaaaacagcttata 23407431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 27140573 - 27140478
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttata 103  Q
    |||||||| ||| ||||||| ||||| ||||||  ||||| | |||| |||||||||  |||| ||||| |  |||||||||||||||| ||||||    
T  27140573 tgagagagtttaaggaaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 43029380 - 43029463
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaa 94  Q
    ||||||||||| |||||  ||||||||||| |||||| |||||| |||||||||  |||| || |  |||||||||||| ||||    
T  43029380 gagagcttatgaaaacagtttattacatgtctataagctattttcagcttatttccataagctttaaagaatagcttatgaaaa 43029463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 6977016 - 6976952
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctc 76  Q
    ||||||| ||||||||||||||| ||||||| ||||| | |||||| |||||||  ||||||||||    
T  6977016 gagagctaatggaaacaacttatgacatgttcataagctgttttaa-cttatttccataaactctc 6976952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 11639395 - 11639472
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttat 89  Q
    |||||||||| ||||| ||||| ||||||  ||||| | |||| |||||||||  |||| |||||||||||| |||||    
T  11639395 agagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctctagaataacttat 11639472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 27963361 - 27963438
Alignment:
Q  24 aacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaactta 101  Q
    |||| ||||| ||||||  ||||| | |||| |||||||||| |||| ||||| | |||||||||| |||||||||||    
T  27963361 aacagcttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaacaactta 27963438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 6509278 - 6509381
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    ||||||||||||| |||||| ||||| |||||  |||||  |||||| | |||||||  |||| ||||| || ||||||||| |||||| ||||||||||    
T  6509278 tgagagagcttatagaaacagcttatgacatgcctataaactattttcaccttatttcaataagctctccaggatagcttatgaaaacagcttatagctt 6509377  T
Q  108 atat 111  Q
    ||||    
T  6509378 atat 6509381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 26473730 - 26473820
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaactta 101  Q
    ||||||||||| ||||| ||||| |||||| |||||| || ||| | |||||||  |||| |||||||| ||||||||| |||||||||||    
T  26473730 gagagcttatgaaaacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggatagcttatgaaaacaactta 26473820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 11415247 - 11415146
Alignment:
Q  10 agagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttat 109  Q
    |||||| ||||||||||| ||||| ||||||  ||||| |||| | |||||||||  | ||||||||||| ||||||||| |||||| | |||| |||||    
T  11415247 agagagtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaacagcgtataacttat 11415148  T
Q  110 at 111  Q
    ||    
T  11415147 at 11415146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 44865589 - 44865642
Alignment:
Q  58 cttatttagataaactctctagaatagcttataaaaacaacttatagcttatat 111  Q
    |||||||  ||||||||||||| ||||||||||||| || ||||||||||||||    
T  44865589 cttatttccataaactctctagtatagcttataaaaccagcttatagcttatat 44865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 5069792 - 5069736
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttattt 64  Q
    |||||||||||||||||||| ||||| ||||||| |||||  ||||| |||||||||    
T  5069792 tgagagagcttatggaaacatcttataacatgttcataagtcattttcagcttattt 5069736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 8060764 - 8060669
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttata 103  Q
    |||||||||||||| |||||| ||||   | ||| ||||| |||||| |||||||||  |||| |||||||| || |||||| |||||| ||||||    
T  8060764 tgagagagcttatgaaaacaaattatggaaagttcataagttattttcagcttatttccataagctctctaggattgcttatgaaaacagcttata 8060669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 10079049 - 10079140
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttata 103  Q
    ||||| ||||||||||||||| |||| ||  ||||| | |||||||||| |||  ||||||| || ||||||||| || |||||| ||||||    
T  10079049 agagcctatggaaacaacttaatacacgtccataagttgttttaagcttctttccataaactttccagaatagctcatgaaaacagcttata 10079140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 26479877 - 26479794
Alignment:
Q  11 gagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaa 94  Q
    |||||||||||||||||||||||  ||||| |||||| | |||| ||| |||||  |||| ||||| ||||||| |||| ||||    
T  26479877 gagagcttatggaaacaacttatgtcatgtctataagtttttttcagcgtatttccataagctctccagaataggttatgaaaa 26479794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 28769357 - 28769416
Alignment:
Q  51 ttttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttata 110  Q
    |||| |||||||||  |||||||||| | |||||||||| |||||| |||||||||||||    
T  28769357 ttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttata 28769416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 8536039 - 8536105
Alignment:
Q  30 ttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaaca 96  Q
    |||| |||||||| |||| |||||||||||||| |  ||||||||||||  ||||||||| ||||||    
T  8536039 ttatgacatgtttctaagctattttaagcttatctccataaactctctatgatagcttatgaaaaca 8536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 24258157 - 24258083
Alignment:
Q  12 agagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagct 86  Q
    ||||||| || |||||| |||| ||||||  ||| | ||||||||||||||||| ||||||||| ||| ||||||    
T  24258157 agagcttgtgaaaacaatttatgacatgtacataggttattttaagcttatttacataaactctttaggatagct 24258083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 29973117 - 29973075
Alignment:
Q  67 ataaactctctagaatagcttataaaaacaacttatagcttat 109  Q
    |||||||||| || ||||||||| |||||||||||||||||||    
T  29973117 ataaactctcaaggatagcttatgaaaacaacttatagcttat 29973075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 30987966 - 30988012
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtatttt 54  Q
    |||||||||||||||||||||||||| ||||||  ||||| ||||||    
T  30987966 tgagagagcttatggaaacaacttatgacatgtccataagctatttt 30988012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 34770925 - 34770887
Alignment:
Q  70 aactctctagaatagcttataaaaacaacttatagctta 108  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  34770925 aactctctaggatagcttatgaaaacaacttatagctta 34770887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 39551193 - 39551283
Alignment:
Q  17 ttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagctt 107  Q
    ||||||||||||||||| ||||||  | ||| | |||| | |||||||  |||| ||||| || | ||||||| |||||||||||||||||    
T  39551193 ttatggaaacaacttatgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagcttatgaaaacaacttatagctt 39551283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 11183638 - 11183537
Alignment:
Q  10 agagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttatagcttat 109  Q
    |||||||||||  ||||||||||| | |||| |||||| | |||| |||||||||  |||| ||||| ||  |||||| | |||||| ||||||||| ||    
T  11183638 agagagcttataaaaacaacttatgatatgtctataagctgttttcagcttatttccataagctctccagggtagcttgtgaaaacagcttatagctaat 11183539  T
Q  110 at 111  Q
    ||    
T  11183538 at 11183537  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 11569434 - 11569527
Alignment:
Q  10 agagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaacttata 103  Q
    |||||||||||||||||| ||||| ||||||  ||||| | |||| |||||||||  | || ||||| |  ||||||||| |||||| ||||||    
T  11569434 agagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 27645999 - 27645906
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaactta 101  Q
    |||||||||||||| | ||||||||| |||| | |||||| |||||| | |||||||  |||| |||||||| ||| || || |||| ||||||    
T  27645999 tgagagagcttatgcatacaacttatgacatatctataagctattttcaacttatttctataagctctctagtatatctaatgaaaataactta 27645906  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 306414 - 306329
Alignment:
Q  15 gcttatggaaacaacttattacatgtttataaggtattttaagcttatttagataaactctctagaatagcttataaaaacaactt 100  Q
    ||||||||||||| ||||| |||||   ||||| | |||| |||||| ||| |||| |||||||| ||||||||| ||||||||||    
T  306414 gcttatggaaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaactt 306329  T

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Target: scaffold0608 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 9612 - 9668
Alignment:
Q  8 tgagagagcttatggaaacaacttattacatgtttataaggtattttaagcttattt 64  Q
    ||||||| |||||| ||||||||||||||||||| ||||| | |||| |||||||||    
T  9612 tgagagaacttatgaaaacaacttattacatgttcataagctgtttttagcttattt 9668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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