View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4761-Insertion-8 (Length: 845)
Name: NF4761-Insertion-8
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4761-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 9 - 812
Target Start/End: Complemental strand, 39527670 - 39526853
Alignment:
| Q |
9 |
aatgttacaacgataagtggtttacacaagataagataggaacaaaaatacatttcttggaagatagcacgtgtggagaagaattaaaagcactggctga |
108 |
Q |
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| T |
39527670 |
aatgttacaacgataagtggtttacacaagataagataggaacaaaaatacatttcttggaagatagcacgtgtggagaagaattaaaagcactggctga |
39527571 |
T |
|
| Q |
109 |
ctaaatggagtatagtccaacatatgggcaagttaagaaaaattataggccaaactaacgagagatttagagataaacaaacctatcttaacacttgatc |
208 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39527570 |
ctaaatggagtatagtccaacataagggcaagttaagaaaaattataggccaaactaacgagagatttagagataaacaaacctatcttaacacttgatc |
39527471 |
T |
|
| Q |
209 |
catgacagaaatttatctaggtcttccccagctagtggaagcctgttttgctgttatt---------------------acacttaactgttattatttg |
287 |
Q |
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| T |
39527470 |
catgacagaaatttatctaggtcttccccagctagtggaagcctgttttgctgttatttctgttgtgtaaaattgttttacacttaactgttattatttg |
39527371 |
T |
|
| Q |
288 |
agattaattattatgcattctttaagattgatatttgtcttactgttatgataagtatttatcagagaagcactgaatgattgaaaaagttagctcccca |
387 |
Q |
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| T |
39527370 |
agattaattattatgcattctttaagattgatgtttgtcttactgttatgataagtatttatcagagaagcactgaatgattgaaaaagttagctcccca |
39527271 |
T |
|
| Q |
388 |
gtccctacctctctttgtgttttctattgtacactatgctctgtttgcttgtggaattagtttgcttagnnnnnnnatatcaaactatgcggcataaatc |
487 |
Q |
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| T |
39527270 |
gtccctacctctc--tgtgttttctattgtacactatgctctgtttgcttgtggaattagtttgcttagttttttaatatcaaactatgcggcataaatc |
39527173 |
T |
|
| Q |
488 |
aaattataaccattaaatttcttagcaagctgttctgatgcagatcggcaatcatttcttaacactaacaagtgggttgaggaggtacgtgcagaacgag |
587 |
Q |
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| T |
39527172 |
aaattataaccattaaatttcttagcaagctgttctgatgcagatcggcaatcatttcttaacactaacaagtgggttgaggaggtacgtgcagaacga- |
39527074 |
T |
|
| Q |
588 |
ggcagtgatgttattatcgttttggttggaaacaaaactgatcttgttgaaaaaaggtgagcagggagtcaaccagtcaggacattgagcattttccttg |
687 |
Q |
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| T |
39527073 |
ggcagtgatgttattatcgttttggttggaaacaaaactgatcttgttgaaaaaaggtgagtagggagtcaaccagtcaggacattgagcattttccttg |
39526974 |
T |
|
| Q |
688 |
atagttacatatcaactgggtttggctgacttgacataannnnnnnncaaatactttttatttgtacatttgacacctggtttttattagatgttttcta |
787 |
Q |
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| T |
39526973 |
atagttacatatcaactgg--tttgctgacttgacataattttttttcaaatac-ttttatttgtacattagacacctggtttttattcgatg-tttcca |
39526878 |
T |
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| Q |
788 |
tactatgtttgctataattcttgtt |
812 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
39526877 |
tactatgtttgctataattcttgtt |
39526853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 534 - 648
Target Start/End: Complemental strand, 37852992 - 37852879
Alignment:
| Q |
534 |
ggcaatcatttcttaacactaacaagtgggttgaggaggtacgtgcagaacgagggcagtgatgttattatcgttttggttggaaacaaaactgatcttg |
633 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||| |||||| || ||||||||||| || || ||||||||||||||||||||||||| |
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| T |
37852992 |
ggcaatcatttctgaacactaacaagtgggttgaggaggtgcgtcaagaacgtggt-agtgatgttataattgtcttggttggaaacaaaactgatcttg |
37852894 |
T |
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| Q |
634 |
ttgaaaaaaggtgag |
648 |
Q |
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| T |
37852893 |
tcgagaaaaggtgag |
37852879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 645
Target Start/End: Original strand, 4583523 - 4583580
Alignment:
| Q |
588 |
ggcagtgatgttattatcgttttggttggaaacaaaactgatcttgttgaaaaaaggt |
645 |
Q |
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||||||||||| ||||| ||| | ||||| |||||||||||||| |||||||| |||| |
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| T |
4583523 |
ggcagtgatgtcattattgttcttgttgggaacaaaactgatctcgttgaaaagaggt |
4583580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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