View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4761-Insertion-9 (Length: 651)
Name: NF4761-Insertion-9
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4761-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 8 - 569
Target Start/End: Complemental strand, 9814552 - 9813993
Alignment:
| Q |
8 |
acatatatattaatcttggagtaatttgcatcttttgtgtgggaaaaatgaagcaaccagaagtatggggtattggatctcttgtggcgtttttgatcat |
107 |
Q |
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| T |
9814552 |
acatatatattaatcttggattaatttgcatcttttgtgtgggaaaaatgaagcaaccagaagtatggggtataggatctcttgtggcgttcttgatcat |
9814453 |
T |
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| Q |
108 |
tgtagcaatacttgtttttggtccatttatcatgggacctgtttcaccccctggatttctgttgttgttggtgtttcctgttgttattgcagcgcttgtc |
207 |
Q |
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| T |
9814452 |
tgtagcaatacttgtttttggtccatttttcatgggacctgtttcaccccctggatatctgttgttgttggtgtttcctgttgttattgcagcacttatc |
9814353 |
T |
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| Q |
208 |
atttttctcataatatgctctaaatgatgactacacaatatccatacatgcttcttcaacgtcgacggtggccacaaataataatactatggtatatgat |
307 |
Q |
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| T |
9814352 |
atttttctcataatatgctctaaatgatgactacacaatatccatgcatgcttcttcaacgtcgatggtggccacaaataataatactatggtacatgat |
9814253 |
T |
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| Q |
308 |
atgatttcatgtacttctttgttttgttg---attaatattataataaggcattcgatgtaatagtttgtatgtgtgtgtagtaagtctttgtgtttttc |
404 |
Q |
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| T |
9814252 |
ataatttcatgtacttctttgttttgttgattattaatattataataaggcattcgatgtaatagtttgtatgtgtgt---gtaagtctttgtgtttttc |
9814156 |
T |
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| Q |
405 |
tattatgttgttgtgatcaaacatatgtgtgtggttttatattgtgaagattgttcttcatgaaattaagcacacactatgtaaagccattgttataaag |
504 |
Q |
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| T |
9814155 |
tattatgttgttgtgatcaaac--atgtgtgtggttttatattgtgaagattattcttcatgaaattaagcacacactatgtaaagccattgttataaag |
9814058 |
T |
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| Q |
505 |
tggttttagtttaataaaatattgtttcttcaattgatttgttcattcgttttctatttatcaat |
569 |
Q |
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| T |
9814057 |
tggttttagtttaataaaatatcgtttcttcaattcatttgttcgttcgttttctctttatcaat |
9813993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 603 - 651
Target Start/End: Complemental strand, 9813952 - 9813904
Alignment:
| Q |
603 |
ttagtgaaaagtattattcgtttatcgatattgtagagtaatatcaccg |
651 |
Q |
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| T |
9813952 |
ttagtgaaaagtattattcgtttatcgatattgtagagtaatatcaccg |
9813904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 495 - 622
Target Start/End: Original strand, 49060239 - 49060366
Alignment:
| Q |
495 |
tgttataaagtggttttagtttaataaaatattgtttcttcaattgatttgttcattcgttttctatttatcaattgcatttgtctcgcattcatcgatg |
594 |
Q |
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| T |
49060239 |
tgttgtaaagtggttttagtttaataaagtttattttcttcaattgatttgttcattcgttttctctttatcaattgcatttgccttgcattcaacgatg |
49060338 |
T |
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| Q |
595 |
attgaagtttagtgaaaagtattattcg |
622 |
Q |
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| T |
49060339 |
gttgaagtttagtgaaaagtattattcg |
49060366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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