View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4761_high_1 (Length: 438)
Name: NF4761_high_1
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4761_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 32340587 - 32340177
Alignment:
| Q |
11 |
cagagaatggcagggagattggctaaacaaaatgttaacacattgccaaatcaaaaggatcaacttgtacatgatgttccaatggatgaaccacatagag |
110 |
Q |
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| T |
32340587 |
cagagaatggcagggagattggctaaacaaaatgttaacacattgccaaatcaaaaggatcaacttgtacatgatgttccaatggatgaaccacatagag |
32340488 |
T |
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| Q |
111 |
cttcttgtactatttcagtggataaatattccaatgtaggtagatagatagatctttattatttattgaatttccattgtcaatatatgagttatacaaa |
210 |
Q |
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| T |
32340487 |
cttcttgtactatttcagtggataaatattccaatgtaggtagatagatagatctttattatttattgaatttccattgtcaatatatgagttatacaaa |
32340388 |
T |
|
| Q |
211 |
atatgaattttcattcgaaaactcacatttataacgattaactaatatattgatctcaaatatttttcatatggnnnnnnnggttattagagttttacct |
310 |
Q |
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| T |
32340387 |
atatggattttcatttgaaaactcacatttataatgattaactaatatattgatctcaaatatttttcatataaaaaaaaaggttattagagttttacct |
32340288 |
T |
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| Q |
311 |
accggaaaatgttgtccacacccatacatacaccctcttgacaccttgagagggaaaaatataaagagtcgtgttatagattgatgatatgatttacaag |
410 |
Q |
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| T |
32340287 |
atcggaaaatgttgtccacacccatacatacaccctcttgacaccttgagagggaaaaatataaagagtcgtgttatagattgatgatatgatttacaag |
32340188 |
T |
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| Q |
411 |
aagagaaagat |
421 |
Q |
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| T |
32340187 |
aagagaaagat |
32340177 |
T |
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