View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4761_high_14 (Length: 230)
Name: NF4761_high_14
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4761_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 10969858 - 10970062
Alignment:
| Q |
16 |
atgaatatggagttaattagaatgtcccatgggattttctttcttattttgataaaataatgtgagagggaaattcatgtatacctag--------ctag |
107 |
Q |
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| T |
10969858 |
atgaatatggagttaattagaatgtcccatgggattttctttcttattttgataaaataatgtgagagggaaattcatgtatacctagctagctagctag |
10969957 |
T |
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| Q |
108 |
ctatttatgattttatttttcttctagctagctaaatggatctttgtgtgtaggtgttattatatttacaaaaagctaatgtgtgtgtgaagtagggtaa |
207 |
Q |
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| T |
10969958 |
ctatttatgattttatttttcttctagctagctaaatggatctttgtgtgtaggtgttattatatttacaaaaagctaatttgtgtgtgaagtagggtag |
10970057 |
T |
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| Q |
208 |
ctttt |
212 |
Q |
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||||| |
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| T |
10970058 |
ctttt |
10970062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 7754275 - 7754209
Alignment:
| Q |
30 |
aattagaatgtcccatgggattttctttcttattttgataaaataatgtgagagggaaattcatgta |
96 |
Q |
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| T |
7754275 |
aattagaaagttctatggaattttctttcttattttgataaaataatgtgctaggggaatttatgta |
7754209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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