View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4761_high_3 (Length: 427)

Name: NF4761_high_3
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4761_high_3
NF4761_high_3
[»] chr3 (3 HSPs)
chr3 (18-409)||(8341681-8342072)
chr3 (34-140)||(8333037-8333143)
chr3 (82-407)||(26727282-26727604)
[»] scaffold0061 (1 HSPs)
scaffold0061 (34-407)||(29813-30192)
[»] scaffold0017 (2 HSPs)
scaffold0017 (34-407)||(168600-168979)
scaffold0017 (19-409)||(173607-174003)
[»] chr1 (6 HSPs)
chr1 (19-298)||(44144710-44144990)
chr1 (82-409)||(44785757-44786086)
chr1 (128-407)||(44611501-44611786)
chr1 (82-401)||(35898799-35899124)
chr1 (19-272)||(11544676-11544933)
chr1 (19-133)||(44612085-44612199)
[»] chr2 (4 HSPs)
chr2 (34-290)||(29228546-29228802)
chr2 (34-290)||(29341845-29342101)
chr2 (354-402)||(29228864-29228912)
chr2 (354-402)||(29342163-29342211)
[»] chr5 (10 HSPs)
chr5 (304-407)||(29508253-29508356)
chr5 (37-119)||(29508115-29508197)
chr5 (34-122)||(29507536-29507624)
chr5 (37-122)||(29507611-29507696)
chr5 (37-122)||(29507683-29507768)
chr5 (84-122)||(29507874-29507912)
chr5 (84-122)||(29507946-29507984)
chr5 (84-122)||(29508090-29508128)
chr5 (37-122)||(29507755-29507840)
chr5 (37-122)||(29507971-29508056)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 8342072 - 8341681
Alignment:
Q  18 cagagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattccca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  8342072 cagagattgcaataacgaaagatttccgagttggaaagggattgtaccaacaagatcattaagactgagattaaggtgttgcaattgtgagagattccca 8341973  T
Q  118 agttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat 217  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341972 agttgagtaggaatctttccctcataaccaccgtttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat 8341873  T
Q  218 tcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaatcgtgtagatcaagcttttc 317  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  8341872 tcaaataactgaggtcaagatatgttagatgttacaactcagttattgaaggattgatttcaccactcaaataatgtgaatggtgtagatcaagcttttc 8341773  T
Q  318 aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8341772 aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatctgcagttggaccgtccttccatgcggacaacatgccataat 8341681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 8333143 - 8333037
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 133  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8333143 gaaagattttcgagttggaaagggatttttccaacaagatcattaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 8333044  T
Q  134 tcccctc 140  Q
    | |||||    
T  8333043 ttccctc 8333037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 82 - 407
Target Start/End: Complemental strand, 26727604 - 26727282
Alignment:
Q  82 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 181  Q
    ||||||| |||||||||||| |||||||| || |||||||||| |||||||||| | | | ||    |||||||||||| |||||||||||| ||| |||    
T  26727604 ctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttctcattaaaaaaggcatttgagagattaaggtatcgtaaattgatga 26727505  T
Q  182 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc 281  Q
    | || |||||||| ||||| || ||||| ||| |  ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26727504 aggagccaataaaatttgggatatgacctctaatcatcaatgaactaaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaca 26727405  T
Q  282 actcaaataatatgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccg 381  Q
    | | |   ||||  || | || | ||||||  ||| ||||||||| ||||  |||||||||   | |||  |||||||||||||||| ||| || || |     
T  26727404 attta---aatacaaaccatgcaaatcaagtctttgaacataacctgtttcgttgttgcataagactcccatccatttgcagcaatctgcattttgatca 26727308  T
Q  382 tccttccatgcggacaacatgccata 407  Q
    |||||||||| |||||| ||||||||    
T  26727307 tccttccatgtggacaaaatgccata 26727282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 34 - 407
Target Start/End: Original strand, 29813 - 30192
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 133  Q
    |||||||||||||||||||||||||||  ||||   ||||||||    || |||| ||| ||| |||||||||| ||||||||||||||| |||||||||    
T  29813 gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct 29912  T
Q  134 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 233  Q
    |||| ||||||||||||  |||||||||||||||| |||| |||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  29913 tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc 30012  T
Q  234 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagcttttcaacataaccg 327  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||      |  ||| | || ||||||||||||||||||||||||    
T  30013 aagatattttagatgttgcaactcagttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccg 30112  T
Q  328 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccata 407  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| |||||    
T  30113 gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccata 30192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 34 - 407
Target Start/End: Complemental strand, 168979 - 168600
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 133  Q
    |||||||||||||||||||||||||||  ||||   ||||||||    || |||| ||| ||| |||||||||| ||||||||||||||| |||||||||    
T  168979 gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct 168880  T
Q  134 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 233  Q
    |||| ||||||||||||  |||||||||||||||| |||| |||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  168879 tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc 168780  T
Q  234 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagcttttcaacataaccg 327  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||      |  ||| | || ||||||||||||||||||||||||    
T  168779 aagatattttagatgttgcaactcagttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccg 168680  T
Q  328 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccata 407  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| |||||    
T  168679 gtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccata 168600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 174003 - 173607
Alignment:
Q  19 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 118  Q
    ||||| ||||| || |||||||||||||||||||||||||||  |||||  || |||||  | || |||| ||||| |  ||||||||| ||||| ||||    
T  174003 agagactgcaacaatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaagatcaaggtatcacaattgtgatagatttccaa 173904  T
Q  119 gttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtatt 218  Q
    ||| |  ||||| |||||| ||||||  ||||||||| ||||||||||  || || |||||||| || |||||||||||||  ||||||| |||||||||    
T  173903 gttcaaaaggaaccttcccatcataatgaccatttgacagatcaaggtgccgcaacttgctgaaggagccaataaattttgagatttgactactagtatt 173804  T
Q  219 caaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataa------tatgaatcgtgtagatcaagc 312  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |      |  ||  | || ||||||||     
T  173803 caaataactgaggtctaaatatgttagattttgtaactcagttattgaaggattgatttcaccactcaaatgacgtgtttccgagccatgcagatcaaga 173704  T
Q  313 ttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataat 409  Q
     ||| ||||||||| ||||   |||||||||||| ||| |||||||||||||||||  || || ||||| ||||||||| |||||||||||||||||    
T  173703 ctttgaacataaccagtttcgatgttgcattgaactcccttccatttgcagcaatcttcattttgaccgcccttccatgtggacaacatgccataat 173607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 44144990 - 44144710
Alignment:
Q  19 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 118  Q
    ||||| |||||||| |||||||||||||||||||||||||||  |||||  || |||||  | || | || ||||||| ||||| |||||||||||||||    
T  44144990 agagactgcaataatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaaaatcaaggtgtcgcaatcgtgagagattcccaa 44144891  T
Q  119 gttgagtaggaatcttcccctcataaccaccatttgagagatcaa-ggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtat 217  Q
    |||||| |||||||||||| ||||||||||||  ||||||||||| ||| |||||| |||||||| || |||||||||||||| |||||||||| |||||    
T  44144890 gttgagcaggaatcttcccatcataaccaccaactgagagatcaaaggtgtcgtaacttgctgaaggagccaataaattttgggatttgaccaccagtat 44144791  T
Q  218 tcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaataatatgaat 298  Q
    |||||||||| |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  44144790 tcaaataacttaggtctagatgtgttagatgttgcagcacagttattgaaggattgatttcaccactcaaatcatatgaat 44144710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 82 - 409
Target Start/End: Original strand, 44785757 - 44786086
Alignment:
Q  82 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 181  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||  | |||||||||  |||||| ||||||||||||||||||||||    
T  44785757 ctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctttccaccgtaaccaccaactgagaggtcaaggtatcgtaagttgctga 44785856  T
Q  182 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc 281  Q
    | |||||||||||||||||||||||| || ||||| |||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||    
T  44785857 aggatccaataaattttggaatttgatcattagtaatcaaatgactgaggtctagatattttagatgtcgcagctcagttattgaaggattgattacacc 44785956  T
Q  282 actcaaataatatgaatcgtgta-gatcaagcttttcaac--ataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttgga 378  Q
    ||||||||||  ||  || || |  ||  || || | |||  ||| || ||||| ||||||||||||| ||||| ||||||||| ||||| ||| |||||    
T  44785957 actcaaataacgtgtttc-tgaaccatgcagattctgaacatatatccagtttggttgttgcattgaactccttcccatttgcaacaatctgcatttgga 44786055  T
Q  379 ccgtccttccatgcggacaacatgccataat 409  Q
    ||||| ||| ||| |||||||||||||||||    
T  44786056 ccgtctttcgatgtggacaacatgccataat 44786086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 128 - 407
Target Start/End: Complemental strand, 44611786 - 44611501
Alignment:
Q  128 gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataact 227  Q
    |||||||||| ||| |||||| |||||||||||||||||||| |||||||| ||| || |||||||||||||| ||||||||||||||||||| ||||||    
T  44611786 gaatcttcccatcaaaaccactatttgagagatcaaggtatcttaagttgcagaaggagccaataaattttgggatttgaccactagtattcagataact 44611687  T
Q  228 gaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaa------ataatatgaatcgtgtagatcaagcttttcaaca 321  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||         ||| ||  | || ||||||||  ||| ||||    
T  44611686 gaggtttagatatgttagatgttgcaactcagttattgaaggattgatttcaccaaacaatcggcgtcgatacgagccatgcagatcaagactttgaaca 44611587  T
Q  322 taaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccata 407  Q
    ||||| |||||| |||||||||||| ||| ||||||||||||||||| |||  || ||| |||||||||| ||||||||| |||||    
T  44611586 taaccagtttgaatgttgcattgaactcccttccatttgcagcaatctgcatctgaaccctccttccatgtggacaacataccata 44611501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 82 - 401
Target Start/End: Complemental strand, 35899124 - 35898799
Alignment:
Q  82 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 181  Q
    ||||||| ||||| ||||||   ||||||||||| ||| |||| |||||||||||| ||  |||||| |||||||||||||| |||||| ||||||||||    
T  35899124 ctgagatcaaggtattgcaacaatgagagattcctaagctgagcaggaatcttcccatcgaaaccactatttgagagatcaatgtatcgcaagttgctga 35899025  T
Q  182 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggattgatttcacc 281  Q
    | || |||||||||||||| ||||||||||||||||||||| |||  ||||||| |||||| ||||||||||| ||||||||| |||| |||||||  ||    
T  35899024 aggagccaataaattttgggatttgaccactagtattcaaaaaaccaaggtctaaatatgtaagatgttgcaattcagttattaaagggttgattttgcc 35898925  T
Q  282 actcaaata------atatgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagtt 375  Q
     ||||||||       | |||| | || | ||||||  ||| || |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| ||    
T  35898924 tctcaaatagcgtgtttttgaaccatgcaaatcaagactttgaatataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcattt 35898825  T
Q  376 ggaccgtccttccatgcggacaacat 401  Q
    ||||  || |||||||  ||||||||    
T  35898824 ggactatcattccatgtagacaacat 35898799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 11544676 - 11544933
Alignment:
Q  19 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 118  Q
    ||||| ||||| || ||||||||||||||||||||||| |||  |||||  || |||||  | || |||| |||||||  ||| ||||||||||| ||||    
T  11544676 agagactgcaacaatgaaagatttccgagttggaaaggaatttctccaatgagttcattgtagctaagatcaaggtgtctcaactgtgagagattgccaa 11544775  T
Q  119 gttgagtag----gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactag 214  Q
    |||||| ||    |||||||| | | ||||  || ||||||||||| |||||||| ||| ||| | || || |||||||||||||| ||||||     |     
T  11544776 gttgagaaggaatgaatcttcgcatgataataactatttgagagattaaggtatcataacttggttaaggagccaataaattttgggatttgagtgaaaa 11544875  T
Q  215 tattcaaataactgaggtctagatatgttagatgttgcaactcagttattgaaggatt 272  Q
    || ||| |  ||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  11544876 taatcatactactgaggtctaaatattttagatgttgtaactcagttattgaaggatt 11544933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 44612199 - 44612085
Alignment:
Q  19 agagattgcaataacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaa 118  Q
    ||||| ||||| || ||||||||||| |||||||||||||||  ||||   || |||||    || |||| ||||||| |||||||||||||||||||||    
T  44612199 agagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaa 44612100  T
Q  119 gttgagtaggaatct 133  Q
    |||||| ||||||||    
T  44612099 gttgagaaggaatct 44612085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 34 - 290
Target Start/End: Original strand, 29228546 - 29228802
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 133  Q
    |||||||||||||||||||||||||||| |||||  || |||||    || |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  29228546 gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct 29228645  T
Q  134 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 233  Q
    |||| ||||||  |||  |||||||||  |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||    
T  29228646 tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc 29228745  T
Q  234 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaata 290  Q
    ||||||| |||||||||||| |||||||| ||||| ||| |||||||||||||||||    
T  29228746 tagatattttagatgttgcagctcagttagtgaagaatttatttcaccactcaaata 29228802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 34 - 290
Target Start/End: Original strand, 29341845 - 29342101
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 133  Q
    |||||||||||||||||||||||||||| |||||  || |||||    || |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  29341845 gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct 29341944  T
Q  134 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 233  Q
    |||| ||||||  |||  |||||||||  |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||    
T  29341945 tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc 29342044  T
Q  234 tagatatgttagatgttgcaactcagttattgaaggattgatttcaccactcaaata 290  Q
    ||||||| |||||||||||| |||||||| ||||| ||| |||||||||||||||||    
T  29342045 tagatattttagatgttgcagctcagttagtgaagaatttatttcaccactcaaata 29342101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 29228864 - 29228912
Alignment:
Q  354 ccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatg 402  Q
    ||||||||| ||||| |||||||||||||| ||||||| | ||||||||    
T  29228864 ccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatg 29228912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 29342163 - 29342211
Alignment:
Q  354 ccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatg 402  Q
    ||||||||| ||||| |||||||||||||| ||||||| | ||||||||    
T  29342163 ccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatg 29342211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 29508253 - 29508356
Alignment:
Q  304 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 403  Q
    ||||||||  ||| ||||||||| ||||||||||||||| ||| ||| |||||||||||||||||  || ||||  |||||||||||| |||||||||||    
T  29508253 agatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgc 29508352  T
Q  404 cata 407  Q
    ||||    
T  29508353 cata 29508356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 29508115 - 29508197
Alignment:
Q  37 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaag 119  Q
    |||||||| |||||||| || |||| |||||  || ||||||  |||||||| |||||||||||||||||||||||| |||||    
T  29508115 agatttccaagttggaagggaattgctccaatgagttcattacctctgagatcaaggtgttgcaattgtgagagatttccaag 29508197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 29507536 - 29507624
Alignment:
Q  34 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    |||||||||  |||||| |||||||||| |||||  || |||||  | ||||||| ||||||||| |||||||||||||| ||||||||    
T  29507536 gaaagattttggagttgtaaagggattgctccaattagttcattgtagctgagatcaaggtgttgtaattgtgagagatttccaagttg 29507624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 29507611 - 29507696
Alignment:
Q  37 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    |||||||| |||||||| || |||| |||||  || |||||    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507611 agatttccaagttggaagggaattgctccaatgagttcattttcgctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 29507683 - 29507768
Alignment:
Q  37 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    |||||||| |||||||| || |||| |||||  || |||||    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507683 agatttccaagttggaagggaattgctccaatgagttcatttctgctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 29507874 - 29507912
Alignment:
Q  84 gagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507874 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 29507946 - 29507984
Alignment:
Q  84 gagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507946 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 29508090 - 29508128
Alignment:
Q  84 gagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29508090 gagatcaaggtgttgcaattgtgagagatttccaagttg 29508128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 29507755 - 29507840
Alignment:
Q  37 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    |||||||| |||||||| || |||  |||||  || |||||  | ||||||| ||| |||||||||||||||||||| ||||||||    
T  29507755 agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg 29507840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 29507971 - 29508056
Alignment:
Q  37 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 122  Q
    |||||||| |||||||| || |||  |||||  || |||||  | ||||||| ||| |||||||||||||||||||| ||||||||    
T  29507971 agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg 29508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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