View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4761_high_8 (Length: 272)
Name: NF4761_high_8
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4761_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 6881670 - 6881804
Alignment:
| Q |
82 |
caattagcagcttctcgtaattgcgaacttgactctgattgtccaaattatttgtgttaccctcctaaagttgggaagtgttattttcataattgttact |
181 |
Q |
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| T |
6881670 |
caattagcagcttctcgtaattgcgaacttgactctgattgtccaaattatttgtgttaccctcctaaagttgggaagtgttattttcataattgttact |
6881769 |
T |
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| Q |
182 |
gcaattaacaagtaagttgaataattatttcgttt |
216 |
Q |
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| T |
6881770 |
gcaattaacaagtaagttgaataattatttcgttt |
6881804 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 257
Target Start/End: Original strand, 6881821 - 6881850
Alignment:
| Q |
228 |
ttttaaggatatttcgtttcttttgtaatc |
257 |
Q |
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| T |
6881821 |
ttttaaggatatttcgtttcttttgtaatc |
6881850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 1779058 - 1779155
Alignment:
| Q |
120 |
ttgtccaaattatttgtgttaccctcctaaagttgggaagtgttattttcataattgttactgcaattaacaagtaagttgaataattatttcgtttc |
217 |
Q |
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| T |
1779058 |
ttgtccaaattatttgtgttcggatcctaaagttggaaaatgtatttataataattgttactgcatttaatagttaagttcaaaaataatttcgtttc |
1779155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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