View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4761_low_11 (Length: 261)

Name: NF4761_low_11
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4761_low_11
NF4761_low_11
[»] chr3 (3 HSPs)
chr3 (1-234)||(9254847-9255081)
chr3 (60-156)||(21200603-21200699)
chr3 (60-104)||(50249442-50249486)
[»] chr2 (2 HSPs)
chr2 (43-104)||(41858769-41858830)
chr2 (60-104)||(13240928-13240972)
[»] chr1 (6 HSPs)
chr1 (54-156)||(2544648-2544749)
chr1 (115-158)||(42501218-42501261)
chr1 (115-209)||(6025715-6025809)
chr1 (54-156)||(13827701-13827803)
chr1 (54-102)||(32404711-32404759)
chr1 (60-104)||(43375770-43375814)
[»] chr6 (3 HSPs)
chr6 (87-130)||(33495480-33495523)
chr6 (116-158)||(10617363-10617405)
chr6 (54-159)||(6906955-6907060)
[»] chr8 (2 HSPs)
chr8 (63-104)||(16715331-16715372)
chr8 (87-208)||(38178339-38178460)
[»] chr5 (1 HSPs)
chr5 (60-125)||(42199341-42199406)
[»] chr4 (1 HSPs)
chr4 (60-209)||(54470262-54470411)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 9254847 - 9255081
Alignment:
Q  1 aattgatgatagtatctatcatagagaaatggtagaaacgcagcttagatgacttggatatgtagagagaagacatataggttctttagtaaagagagta 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9254847 aattgatgatagtatctatcatagagaaatggtagatacgcagcgtagatgacttggatatgtagagagaagacatataggttctttagtaaagagagta 9254946  T
Q  101 gatctaatgaaaaatagtcaaatcattagaagtagaagaaaatctagaaaaactataaaagtttctattaaaaaagagcaagag---atatatgagttga 197  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||   |||||| ||   |    
T  9254947 tatctaatgaaaaatagtcaaatcattagaagtagaaaaaaatctagaaaaactataaaagtttttattaaaaaagagcaagagaaaatatat-agaata 9255045  T
Q  198 atagagatatgggtcatctctttccattctctttctc 234  Q
     ||| ||||||||||||||||||||||||||||||||    
T  9255046 ttag-gatatgggtcatctctttccattctctttctc 9255081  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 21200603 - 21200699
Alignment:
Q  60 atgtagagagaagacatataggttctttagtaaagagagtagatctaatgaaaaatagtcaaatcattagaagtagaagaaaatctagaaaaactat 156  Q
    ||||||||||||||||| ||| ||||  ||||| |||||||||||  ||| | | ||||||||||| |||  | ||| ||| | |||||||||||||    
T  21200603 atgtagagagaagacatgtagattctgcagtaaggagagtagatcacatggagagtagtcaaatcactagggggagaggaagacctagaaaaactat 21200699  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 50249442 - 50249486
Alignment:
Q  60 atgtagagagaagacatataggttctttagtaaagagagtagatc 104  Q
    |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  50249442 atgtagagtgaagacatgtagattctttagtaaggagagtagatc 50249486  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 41858769 - 41858830
Alignment:
Q  43 gcttagatgacttggatatgtagagagaagacatataggttctttagtaaagagagtagatc 104  Q
    |||||||||  ||||| ||||||||||||||||| |||||||| ||||||||| ||||||||    
T  41858769 gcttagatggtttggacatgtagagagaagacatgtaggttctctagtaaagaaagtagatc 41858830  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 13240972 - 13240928
Alignment:
Q  60 atgtagagagaagacatataggttctttagtaaagagagtagatc 104  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||||    
T  13240972 atgtagagagaagacatgtagattctttagtaaggagagtagatc 13240928  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 2544648 - 2544749
Alignment:
Q  54 ttggatatgtagagagaagacatataggttctttagtaaagagagtagatctaatgaaaaatagtcaaatcattagaagtagaagaaaatctagaaaaac 153  Q
    ||||| ||||||||||||||| ||||| |||| |||||| |||||||||||  ||| |  ||||||||| || |||| ||||| ||| | ||||||||||    
T  2544648 ttggacatgtagagagaagacctatagattctatagtaaggagagtagatcagatggaggatagtcaaa-cactagaggtagaggaagacctagaaaaac 2544746  T
Q  154 tat 156  Q
    |||    
T  2544747 tat 2544749  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 42501218 - 42501261
Alignment:
Q  115 tagtcaaatcattagaagtagaagaaaatctagaaaaactataa 158  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||    
T  42501218 tagtcaaatcattagaggtagaggaaaacctagaaaaactataa 42501261  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 6025715 - 6025809
Alignment:
Q  115 tagtcaaatcattagaagtagaagaaaatctagaaaaactataaaagtttctattaaaaaagagcaagagatatatgagttgaatagagatatgg 209  Q
    ||||||||||| |||| | ||| ||| | ||||||||||||||| || | ||| ||||||||| | ||||||  |||||||| ||||| ||||||    
T  6025715 tagtcaaatcactagaggcagaggaagacctagaaaaactataagagatactagtaaaaaagatctagagattaatgagttggatagaaatatgg 6025809  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 13827803 - 13827701
Alignment:
Q  54 ttggatatgtagagagaagacatataggttctttagtaaagagagtagatctaatgaaaaatagtcaaatcattagaagtagaagaaaatctagaaaaac 153  Q
    ||||| ||||||||||||||  | ||| |||| |||||| |||||||||||  ||| || ||||||| |||| |||| | ||| ||| | ||||||||||    
T  13827803 ttggacatgtagagagaagaagtgtagattctgtagtaaggagagtagatcatatggaacatagtcagatcactagaggcagaggaagacctagaaaaac 13827704  T
Q  154 tat 156  Q
    |||    
T  13827703 tat 13827701  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 32404759 - 32404711
Alignment:
Q  54 ttggatatgtagagagaagacatataggttctttagtaaagagagtaga 102  Q
    ||||||||||||||||||||| | ||| |||| |||||| |||||||||    
T  32404759 ttggatatgtagagagaagacctgtagattctatagtaaggagagtaga 32404711  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 43375814 - 43375770
Alignment:
Q  60 atgtagagagaagacatataggttctttagtaaagagagtagatc 104  Q
    ||||||||||||||| ||||| || | ||||||||||||||||||    
T  43375814 atgtagagagaagacctatagattatgtagtaaagagagtagatc 43375770  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 33495480 - 33495523
Alignment:
Q  87 tagtaaagagagtagatctaatgaaaaatagtcaaatcattaga 130  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||    
T  33495480 tagtaaagaaagtagatcaaatgaaaaatagtcaaatcaataga 33495523  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 10617405 - 10617363
Alignment:
Q  116 agtcaaatcattagaagtagaagaaaatctagaaaaactataa 158  Q
    |||||||||| |||| ||||||||||| |||||||||||||||    
T  10617405 agtcaaatcactagaggtagaagaaaacctagaaaaactataa 10617363  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 6907060 - 6906955
Alignment:
Q  54 ttggatatgtagagagaagacatataggttctttagtaaagagagtagatctaatgaaaaatagtcaaatcattagaagtagaagaaaatctagaaaaac 153  Q
    |||| |||||||||||||||||| ||| || | |||||| |||||||||||  ||| |   |||||||||||  ||| ||||| ||| |||| ||||| |    
T  6907060 ttggttatgtagagagaagacatgtagattttgtagtaaggagagtagatcagatgcagggtagtcaaatcacgagaggtagatgaagatcttgaaaagc 6906961  T
Q  154 tataaa 159  Q
    ||||||    
T  6906960 tataaa 6906955  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 16715331 - 16715372
Alignment:
Q  63 tagagagaagacatataggttctttagtaaagagagtagatc 104  Q
    |||||||||||||| |||||||||||||||  ||||||||||    
T  16715331 tagagagaagacatgtaggttctttagtaagtagagtagatc 16715372  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 38178460 - 38178339
Alignment:
Q  87 tagtaaagagagtagatctaatgaaaaatagtcaaatcattagaagtagaagaaaatctagaaaaactataaaagtttctattaaaaaagagcaagagat 186  Q
    |||||| |||||||||||  ||| |  |||||||||||  |||| ||||| ||| | ||||||||||||||| ||   ||||||| ||||| | ||| ||    
T  38178460 tagtaaggagagtagatcagatggaggatagtcaaatcgctagaggtagaggaagacctagaaaaactataagagaaactattaacaaagacctagacat 38178361  T
Q  187 atatgagttgaatagagatatg 208  Q
      |||||||| |||||||||||    
T  38178360 taatgagttggatagagatatg 38178339  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 42199341 - 42199406
Alignment:
Q  60 atgtagagagaagacatataggttctttagtaaagagagtagatctaatgaaaaatagtcaaatca 125  Q
    ||||||||||||||||| ||| |||| |||||| |||||||||||  ||| | | |||||||||||    
T  42199341 atgtagagagaagacatgtagattctgtagtaaggagagtagatcacatggagagtagtcaaatca 42199406  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 54470262 - 54470411
Alignment:
Q  60 atgtagagagaagacatataggttctttagtaaagagagtagatctaatgaaaaatagtcaaatcattagaagtagaagaaaatctagaaaaactataaa 159  Q
    ||||||||||||||||| ||  || | |||||| ||||||| ||| |||| | | ||||||||| | |||| | | ||||| | | |||||||||||||     
T  54470262 atgtagagagaagacatgtaaattatgtagtaaggagagtaaatcaaatggagagtagtcaaattactagaggcaaaagaagaccaagaaaaactataag 54470361  T
Q  160 agtttctattaaaaaagagcaagagatatatgagttgaatagagatatgg 209  Q
    ||  |||||||| ||||  | ||||||  |||||||| ||||| ||||||    
T  54470362 agaatctattaataaagttctagagattaatgagttggatagaaatatgg 54470411  T

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