View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4761_low_2 (Length: 432)
Name: NF4761_low_2
Description: NF4761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4761_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 33825663 - 33825318
Alignment:
| Q |
1 |
tcatggctagaagacatagggaacagtgtactgtgtatagaaggagaaagccagttgttgttgaaagtctttcaaaggatttaaagttaagtctttcaaa |
100 |
Q |
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| T |
33825663 |
tcatggctagaagacatagggaacagtgtactgtgtatagaaggagaaagccagttgttgttgaaagtctttcaaaggatttaaagttaagtctttcaaa |
33825564 |
T |
|
| Q |
101 |
caatgcagctagtgattcaactatctcaagcaccattgatggaaatgtctcaacttgcactaatcttttactcactccttcttcagctaaactagttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33825563 |
caatgcagctagtgattcaactatctcaagcaccattgatggaaatgtctcaacttgcactaatcttttactcactccttcttcagctaaactagttgtt |
33825464 |
T |
|
| Q |
201 |
cctgttgagaatcaccaaggctatggatcactaatgggtatgcaatatttaataaactagtataaaacatggttttaagttgcggttacgattccgctac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33825463 |
cctgttgagaatcaccaaggctatggatcactaatgggtatgcaatatttaataaactagtataaaacatggttttaagttgcgattacgattccgctac |
33825364 |
T |
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| Q |
301 |
aaatatttatattgcggtaaaatgtaggcaaatggaccgatgccgt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33825363 |
aaatatttatattgcggtaaaatgtaggcaaatggaccgatgccgt |
33825318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 346 - 411
Target Start/End: Complemental strand, 33825295 - 33825230
Alignment:
| Q |
346 |
ttgcatatactgtaagtgtatgtttagaatcatgatgaggtttgcaaaattacggcggttcatcgt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33825295 |
ttgcatatactgtaagtgtatgtttagaatcatgatgaggtttgcaaaattacagcggttcatcgt |
33825230 |
T |
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